View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_low_12 (Length: 342)
Name: NF0438_1D_low_12
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_12 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold1034 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 38815437 - 38815767
Alignment:
| Q |
15 |
caccacacaa-gaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca |
113 |
Q |
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| T |
38815437 |
caccacacaaagaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca |
38815536 |
T |
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| Q |
114 |
atgaaggaaatttaaaagccaaatttaagatggctaggggcagaccacaatcaaggcaaaatttccaaca--ctgcctcacaacctggcataaattgggc |
211 |
Q |
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| T |
38815537 |
atgaaggaaatttaaaagccaaatttaagatggctaggggaagaccacaatcaaggcaaaatttccaacaccctgcctcacaacctggcataaattggac |
38815636 |
T |
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| Q |
212 |
taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg |
311 |
Q |
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| T |
38815637 |
taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg |
38815736 |
T |
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| Q |
312 |
gcttgtcaggtgcgcactgtccaaacttaca |
342 |
Q |
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| T |
38815737 |
gcttgtcaggtgcgcactgtccaaacttaca |
38815767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 39079876 - 39079973
Alignment:
| Q |
220 |
tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt |
317 |
Q |
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| T |
39079876 |
tggacaatgcaggaagcccaacgacagatctaggataggctctgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttgt |
39079973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 325
Target Start/End: Original strand, 21048692 - 21048749
Alignment:
| Q |
268 |
catcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcg |
325 |
Q |
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| T |
21048692 |
catcttagaatttgggttgagcctaactcaaccttataaaattggcttgtaaggtgcg |
21048749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 19810946 - 19811043
Alignment:
| Q |
220 |
tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt |
317 |
Q |
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| T |
19810946 |
tggacgatgcgggaagccctgcaacagatctaggatagtctctgataccatcttaaaatttgggttcggcctaagtcaaccttacaaaaccggcttgt |
19811043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 25971227 - 25971173
Alignment:
| Q |
220 |
tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatctta |
274 |
Q |
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| T |
25971227 |
tggacgatgcgggaagtccaacaacagatctaggataggctctgattccatctta |
25971173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 2115576 - 2115530
Alignment:
| Q |
269 |
atcttagagtttgggttgagtctaattcaaccctacaaaatcggctt |
315 |
Q |
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| T |
2115576 |
atcttaaaatttgggttgagtctaattgaaccctacaaaaccggctt |
2115530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 18286766 - 18286713
Alignment:
| Q |
222 |
gacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttag |
275 |
Q |
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| T |
18286766 |
gacaatgcgggaagcccgacaacagatctacgataggctctgatatcatcttag |
18286713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 33455905 - 33455859
Alignment:
| Q |
253 |
gatagactccgatatcatcttagagtttgggttgagtctaattcaac |
299 |
Q |
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| T |
33455905 |
gatagactctgataccatcttagaatttgggttgagtctaactcaac |
33455859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 7252297 - 7252252
Alignment:
| Q |
263 |
gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa |
308 |
Q |
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| T |
7252297 |
gataccatcttagaatttgggttgagcctaactcaaccctacaaaa |
7252252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 1348868 - 1348913
Alignment:
| Q |
263 |
gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa |
308 |
Q |
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| T |
1348868 |
gatatcatcttaaaatttgggttgagtctaactcaaccatacaaaa |
1348913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1034 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1034
Description:
Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 895 - 819
Alignment:
| Q |
242 |
aacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccc-tacaaaatcggcttgt |
317 |
Q |
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| T |
895 |
aacagatcttagttagactctgatatcatcttagaatttgagttaggcctaattcaacccttacaaaatcagcttgt |
819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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