View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_low_13 (Length: 333)
Name: NF0438_1D_low_13
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 4e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 130 - 317
Target Start/End: Original strand, 37444137 - 37444324
Alignment:
| Q |
130 |
ctctcttttgcaccctcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcgctgct |
229 |
Q |
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| T |
37444137 |
ctctcttttgcaccatcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgtttttaaacaagtaatttgtcaaaccctcactgct |
37444236 |
T |
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| Q |
230 |
aatattaaaaatgttcctcacactctcagaccaaaatataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatct |
317 |
Q |
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| T |
37444237 |
aatattaaaaatgttcctcacactctcagaccaaaatataaagcattaataatttccattgaaaaacaacaaaaaagcacaacaatct |
37444324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 43410761 - 43410894
Alignment:
| Q |
5 |
gatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43410761 |
gatatgaacaacttggttctaaaatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacat |
43410860 |
T |
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| Q |
105 |
catctcacacacgtaccattagactctctctttt |
138 |
Q |
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| T |
43410861 |
catctcacacacgtaccattagactctctctttt |
43410894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 7492587 - 7492522
Alignment:
| Q |
130 |
ctctcttttgcaccctcgctcactcaatcctccttttaacaacagttaccctagctaagtcaatgt |
195 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| || | |||| |||||||||| |
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| T |
7492587 |
ctctcttttgcaccattgctcactcaatcctccttttaacaacagctatcttagccaagtcaatgt |
7492522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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