View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_low_16 (Length: 287)
Name: NF0438_1D_low_16
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 40660809 - 40660529
Alignment:
| Q |
8 |
acatcacagaagaaataggaagtaat-gaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
106 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660809 |
acatcacagaagaaataggaagcaatagaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagtttttta |
40660710 |
T |
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| Q |
107 |
ctactacctccggtttgttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660709 |
ctactacctccggttttttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctacttttt |
40660610 |
T |
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| Q |
207 |
gtctacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctgga |
287 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660609 |
gtccacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctgga |
40660529 |
T |
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