View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0438_1D_low_21 (Length: 258)
Name: NF0438_1D_low_21
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 255
Target Start/End: Original strand, 39580839 - 39581073
Alignment:
| Q |
21 |
aaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatg |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580839 |
aaaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatg |
39580938 |
T |
|
| Q |
121 |
taagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39580939 |
taagtgttgtttggtacggttttgaattcgtagaaagatttggaagggaatataattgctgtttggtagagaggtgaaagtggtgttgatagtgatgatg |
39581038 |
T |
|
| Q |
221 |
attgacttgttactttggagcttttgctgaaaact |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39581039 |
attgacttgttactttggagcttttgctgaaaact |
39581073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 39521666 - 39521842
Alignment:
| Q |
22 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
121 |
Q |
| |
|
||||| ||||||||| |||||| |||| |||||| |||||||||||| |||||| ||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
39521666 |
aaattatgtaacagaaggaaaccaggaactgaaacggtgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgt |
39521765 |
T |
|
| Q |
122 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
198 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||| |||| |||||| |||| || |||||||||||| |||||||||| |
|
|
| T |
39521766 |
aagtgttgcttggaacggttttgaattcataggaagaattggaaaggaaaattcttgctgtttggttgagaggtgaa |
39521842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 39525163 - 39525339
Alignment:
| Q |
22 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
121 |
Q |
| |
|
||||||||||||||| |||||| || | |||||| ||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
39525163 |
aaattttgtaacagaatgaaaccagggactgaaacggtgaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccatgt |
39525262 |
T |
|
| Q |
122 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
198 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| ||||| | |||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
39525263 |
aggtgttgtttggtacggttttgaactcgtataaagattcggaatgaaatatccttgctgtttggtagagaggtgaa |
39525339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 39544459 - 39544636
Alignment:
| Q |
22 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
121 |
Q |
| |
|
||||||||||||||| |||||| || | ||||| ||||||||||||| |||||| ||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
39544459 |
aaattttgtaacagaatgaaaccagggactgaaacattgaattttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccatgt |
39544558 |
T |
|
| Q |
122 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaaa |
199 |
Q |
| |
|
| ||||||||||||| ||| ||||| ||| |||||| |||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
39544559 |
aggtgttgtttggtatggtagaaaattcataggaagactcggaatggaatatccttgctgtttggtagagaggtgaaa |
39544636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 39511420 - 39511596
Alignment:
| Q |
22 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
121 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||| | |
|
|
| T |
39511420 |
aaattttgtaacagaatgaaaccaggaactgaaacagtgaattttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatat |
39511519 |
T |
|
| Q |
122 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
198 |
Q |
| |
|
| ||||||||||| | ||||||||||||||| |||| | |||| |||| || |||| ||||||||||||| |||| |
|
|
| T |
39511520 |
aggtgttgtttgggatggttttgaattcgtaccaagattcggaacggaaaatccttgcagtttggtagagagatgaa |
39511596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 39576311 - 39576487
Alignment:
| Q |
22 |
aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgt |
121 |
Q |
| |
|
||||| ||||||||| |||||| |||| ||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||| | |
|
|
| T |
39576311 |
aaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatat |
39576410 |
T |
|
| Q |
122 |
aagtgttgtttggtacggttttgaattcgtagaaagacttggaagggaatataattgctgtttggtagagaggtgaa |
198 |
Q |
| |
|
||||||||||||||| ||| ||||||||| | || | ||| |||| || ||||||||||||| ||||||||| |
|
|
| T |
39576411 |
aagtgttgtttggtatggtagaaaattcgtaggaggattcagaatggaaaattcttgctgtttggtaaagaggtgaa |
39576487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 39544644 - 39544677
Alignment:
| Q |
219 |
tgattgacttgttactttggagcttttgctgaaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
39544644 |
tgattgacttgttactttggagctttttctgaaa |
39544677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 3331579 - 3331509
Alignment:
| Q |
64 |
tttgcagtggaaagattagttggtaaagagaatagaaagaaatggaaacgtaccatgtaagtgttgtttgg |
134 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
3331579 |
tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccatgtaggtgttgtttgg |
3331509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 194 times since January 2019
Visitors: 3272