View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_low_23 (Length: 249)

Name: NF0438_1D_low_23
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_low_23
NF0438_1D_low_23
[»] chr7 (1 HSPs)
chr7 (42-243)||(35231130-35231330)
[»] chr4 (3 HSPs)
chr4 (42-243)||(11292194-11292394)
chr4 (42-243)||(15085831-15086031)
chr4 (46-231)||(44873836-44874021)
[»] chr5 (2 HSPs)
chr5 (42-243)||(64373-64573)
chr5 (92-146)||(5880765-5880819)
[»] chr1 (1 HSPs)
chr1 (42-241)||(28146658-28146856)
[»] chr3 (2 HSPs)
chr3 (46-243)||(5288908-5289104)
chr3 (46-243)||(18414930-18415126)
[»] chr8 (1 HSPs)
chr8 (46-243)||(19919463-19919659)
[»] scaffold0393 (1 HSPs)
scaffold0393 (45-89)||(16501-16546)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 35231330 - 35231130
Alignment:
Q  42 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35231330 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa 35231231  T
Q  142 agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat 241  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  35231230 agaaaaaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgctgtccat 35231132  T
Q  242 ct 243  Q
    ||    
T  35231131 ct 35231130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 11292194 - 11292394
Alignment:
Q  42 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11292194 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccataacaaaatggggtagcggaa 11292293  T
Q  142 agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat 241  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  11292294 agaaaaaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgctgtccat 11292392  T
Q  242 ct 243  Q
    ||    
T  11292393 ct 11292394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 15085831 - 15086031
Alignment:
Q  42 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15085831 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgccccttaactccacaacaaaatggggtagcggaa 15085930  T
Q  142 agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat 241  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  15085931 agaaaaaaccgtcatttgtttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgctgtccat 15086029  T
Q  242 ct 243  Q
    ||    
T  15086030 ct 15086031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 44874021 - 44873836
Alignment:
Q  46 tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaag-a 144  Q
    |||||||||||||||||||| | |||||||||||  ||||| |||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| |    
T  44874021 tacatgtcacactcatttcaagcatttttgcaatacaatggtattatatctcaaagatcatgcccctcagctccacaacaaaatggggcagcggaaagaa 44873922  T
Q  145 aacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccac 231  Q
    || ||||| ||||||||||||||||||| ||| ||||||||  |||||||||||||||||||| |||||||||||||| ||||||||    
T  44873921 aaaaaccgccatttgcttgatgttgttcacactcttttgttgaagtctcatgtgccttcacga-ttttggtgtgaagccctttccac 44873836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 64373 - 64573
Alignment:
Q  42 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  64373 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa 64472  T
Q  142 agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat 241  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | |||||    
T  64473 agaaaaaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccattgctatccat 64571  T
Q  242 ct 243  Q
    ||    
T  64572 ct 64573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 5880819 - 5880765
Alignment:
Q  92 tatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaaa 146  Q
    |||||||||||||||| || || ||||| |||||||| |||||||||||||||||    
T  5880819 tatctcaaaggtcatgtccttccactccccaacaaaacggggtagcggaaagaaa 5880765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 28146658 - 28146856
Alignment:
Q  42 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaa 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28146658 ggagtacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcagaa 28146757  T
Q  142 agaaacaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccat 241  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  28146758 agaaaaaactgtcatttgcttgatgttgttctcacccttttgttagagtctcatgtgccttcacga-ttttggtgtgaagctctttccactgttgtccat 28146856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 5288908 - 5289104
Alignment:
Q  46 tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaa 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5288908 tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgtccctcaactccacaacaaaatggggtagcggaaagaa 5289007  T
Q  146 acaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccatct 243  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||||    
T  5289008 aaaaccgtcatttgcttgatgttgttcgcaccgttttgttagagtctcatgtgccttcacg-gttttggtgtgaagctctttccactgctgttcatct 5289104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 18414930 - 18415126
Alignment:
Q  46 tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaa 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18414930 tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgtccctcaactccacaacaaaatggggtagcggaaagaa 18415029  T
Q  146 acaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccatct 243  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||||    
T  18415030 aaaaccgtcatttgcttgatgttgttcgcaccgttttgttagagtctcatgtgccttcacg-gttttggtgtgaagctctttccactgctgttcatct 18415126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 19919463 - 19919659
Alignment:
Q  46 tacatgtcacactcatttcaggaatttttgcaatctaatggcattatatctcaaaggtcatgcccctcaactccacaacaaaatggggtagcggaaagaa 145  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  19919463 tacatgtcacactcatttcaagcatttttgcaatctaatggcattatatctcaaaggtcatgcgcctcgactccacaacaaaatggggtagcggaaagaa 19919562  T
Q  146 acaaccgtcatttgcttgatgttgttcgcacccttttgttagagtctcatgtgccttcacgatttttggtgtgaagctctttccactgatgtccatct 243  Q
    | |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  19919563 aaaaccgtcatttgctcgatgttgttcgcacccatttgttagagtctcatgtgccttcacga-ttttggtatgaagctctttccactgatgtccatct 19919659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 16501 - 16546
Alignment:
Q  45 gtacatgtcacactcatttcaggaa-tttttgcaatctaatggcat 89  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||    
T  16501 gtacattttacactcatttcaggaattttttgcaatctaatggcat 16546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University