View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_low_28 (Length: 223)
Name: NF0438_1D_low_28
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 200
Target Start/End: Complemental strand, 8705810 - 8705612
Alignment:
| Q |
2 |
gtatggtgttatacaacaaaataacattttaacaaaaactttatctcaaaaacagtctttgtaaataaaagatcatgttccattgtttgtgatttgtgtt |
101 |
Q |
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|||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8705810 |
gtatcgtgtcataaaacaaaataacattttaacaaaaactttatctcaaaaacagtctttgtaaataaaagatcatgttccattgtttgtgatttgtgtt |
8705711 |
T |
|
| Q |
102 |
ttctttaatctgctattactagttgttccactaacaaatatgataccaaaagaaaaaagggttcaaagttcaaaatttcaaacaatgaatccaataaac |
200 |
Q |
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| T |
8705710 |
ttctttaatctgctattactagttgttccactaacaaatatgataccaaaagaaaaaagggttcaaagttcaaaatttcaaacaatgaatccaataaac |
8705612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 14372142 - 14372181
Alignment:
| Q |
2 |
gtatggtgttatacaacaaaataacattttaacaaaaact |
41 |
Q |
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| T |
14372142 |
gtatggtgtcatacaacaaaataacatttcaacaaaaact |
14372181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 42859977 - 42859912
Alignment:
| Q |
63 |
taaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttgtt |
128 |
Q |
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| T |
42859977 |
taaaaaaatgatcatgttctattgtttgcggtttgtgttttccttaatcttctattactagttgtt |
42859912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 38833558 - 38833505
Alignment:
| Q |
73 |
atcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttg |
126 |
Q |
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| T |
38833558 |
atcatgttccattgtttgcaatttgtgttttctttaatcttttgttactagttg |
38833505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 28820799 - 28820862
Alignment:
| Q |
62 |
gtaaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagtt |
125 |
Q |
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| T |
28820799 |
gtaaacaaacgatcgtgttccattgtttgtgatttgtgttttatttaatcttttgttactagtt |
28820862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 32349628 - 32349574
Alignment:
| Q |
72 |
gatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttg |
126 |
Q |
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||||||||||||||||||| |||||||||| |||||||||| | |||||||||| |
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|
| T |
32349628 |
gatcatgttccattgtttgcgatttgtgttatctttaatcttttgttactagttg |
32349574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 35037679 - 35037746
Alignment:
| Q |
62 |
gtaaataaaagatcatgttccattgtttgtgatttgtgttttctttaatctgctattactagttgttc |
129 |
Q |
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| T |
35037679 |
gtaaacaaacgatcaagttccattgtttacgatttatgttatctttaatcttctgttactagttgttc |
35037746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 47573045 - 47572996
Alignment:
| Q |
77 |
tgttccattgtttgtgatttgtgttttctttaatctgctattactagttg |
126 |
Q |
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||||||||||||||| ||||||||||||||| |||| | |||||||||| |
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| T |
47573045 |
tgttccattgtttgttatttgtgttttctttgatcttttgttactagttg |
47572996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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