View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0438_1D_low_30 (Length: 222)
Name: NF0438_1D_low_30
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_30 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23332945 - 23333166
Alignment:
| Q |
1 |
ggctgaccaacacatcaaacacatgacacggttagttccaatcaacataccaaaacagtgcgatgcccactaatgaaccgactaactacatagcatgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23332945 |
ggctgaccaacacatcaaacacatgacacggttagttccaatcaacataccaaaacagtgcaatgcccacaaatgaaccgactaactacatagcatgaat |
23333044 |
T |
|
| Q |
101 |
gataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgtaagtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23333045 |
gataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgtaagtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcat |
23333144 |
T |
|
| Q |
201 |
agcattacattccaaaagtagc |
222 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
23333145 |
agcattactttccaaaagtagc |
23333166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 185 times since January 2019
Visitors: 3272