View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_low_33 (Length: 212)

Name: NF0438_1D_low_33
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_low_33
NF0438_1D_low_33
[»] chr6 (6 HSPs)
chr6 (4-212)||(1410916-1411124)
chr6 (78-212)||(1414366-1414500)
chr6 (80-212)||(1419917-1420046)
chr6 (79-212)||(1408109-1408242)
chr6 (4-51)||(1419865-1419912)
chr6 (4-53)||(1414316-1414365)
[»] chr8 (2 HSPs)
chr8 (79-204)||(3600507-3600632)
chr8 (79-204)||(14339374-14339499)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 1410916 - 1411124
Alignment:
Q  4 tggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaatttata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1410916 tggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtgagaagaatggcaatagtaactctagcaaatgtgtgtaccctgcaatttata 1411015  T
Q  104 actttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataagcttctttggaaacatatcaggaag 203  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1411016 actttggtgattcaaattcggataccggaactgtatatgcaacatttacaggtgttcaatctcctaacggaataagcttctttggaaacatatcaggaag 1411115  T
Q  204 agcttctga 212  Q
    |||||||||    
T  1411116 agcttctga 1411124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 212
Target Start/End: Original strand, 1414366 - 1414500
Alignment:
Q  78 caaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaata 177  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||  ||| |||||||| ||||||| ||||||    
T  1414366 caaatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactatatatgcaacatatacaagtgttcaacctcctaatggaata 1414465  T
Q  178 agcttctttggaaacatatcaggaagagcttctga 212  Q
    |||||||||||||||||||||||||||||||||||    
T  1414466 agcttctttggaaacatatcaggaagagcttctga 1414500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 1419917 - 1420046
Alignment:
Q  80 aatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataag 179  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |||  | ||  |||| ||||||| || |||||    
T  1419917 aatgtgtgtaccctgcaatttataactttggtgactcaaattcagatactggaactgcatatgcaactttcttatgtaatcaacctcctaatggcataag 1420016  T
Q  180 cttctttggaaacatatcaggaagagcttctga 212  Q
       |||||||||||||||||| |||||||||||    
T  1420017 ---ctttggaaacatatcagggagagcttctga 1420046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 212
Target Start/End: Original strand, 1408109 - 1408242
Alignment:
Q  79 aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa 178  Q
    ||||||| ||||||||||||||| || |||||||| |||||||| ||||||||| | | | |||||| || ||||| ||||    ||||||| || ||||    
T  1408109 aaatgtgagtaccctgcaatttacaattttggtgactcaaattcagatactggagcagcaaatgcaatatacacagctgttacgcctcctaatggtataa 1408208  T
Q  179 gcttctttggaaacatatcaggaagagcttctga 212  Q
    ||| |||||||| ||   ||||||||||||||||    
T  1408209 gctactttggaagcaccacaggaagagcttctga 1408242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 1419865 - 1419912
Alignment:
Q  4 tggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagt 51  Q
    ||||||||||| || |||||| ||||||||||||||||||| ||||||    
T  1419865 tggtgtttcaacctgtatgtgacatgtacatttattcaagtttcaagt 1419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 1414316 - 1414365
Alignment:
Q  4 tggtgtttcaatctttatgtggcatgtacatttattcaagtctcaagtga 53  Q
    ||||||||||| || |||||| |||||| |||||||||||| ||||||||    
T  1414316 tggtgtttcaacctgtatgtgacatgtaaatttattcaagtttcaagtga 1414365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 3600507 - 3600632
Alignment:
Q  79 aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa 178  Q
    |||||||| ||||| ||||| || ||||||||||| || ||||| ||||||||| ||| |||||||||| |  ||| |||| |   |||||| || ||||    
T  3600507 aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaatggcagctgttgagcatcctaatggtataa 3600606  T
Q  179 gcttctttggaaacatatcaggaaga 204  Q
    |||||||||||| ||| |||||||||    
T  3600607 gcttctttggaagcatctcaggaaga 3600632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 14339374 - 14339499
Alignment:
Q  79 aaatgtgtgtaccctgcaatttataactttggtgattcaaattcggatactggaactgtatatgcaacattcacaggtgttcaatctcctaacggaataa 178  Q
    |||||||| ||||| ||||| || ||||||||||| || ||||| ||||||||| ||| ||||||||||    ||| |||| | | |||||| || ||||    
T  14339374 aaatgtgtctacccagcaatatacaactttggtgactccaattcagatactggagctggatatgcaacaacggcagctgttgagtatcctaatggtataa 14339473  T
Q  179 gcttctttggaaacatatcaggaaga 204  Q
    |||||||||||| ||| |||||||||    
T  14339474 gcttctttggaagcatctcaggaaga 14339499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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