View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0438_1D_low_35 (Length: 208)
Name: NF0438_1D_low_35
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_35 |
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| [»] scaffold0300 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 3437285 - 3437088
Alignment:
| Q |
1 |
ctaaagacaaagtatgg-ggtcgactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgca |
99 |
Q |
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||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437285 |
ctaaagacaaagtatggtggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgca |
3437186 |
T |
|
| Q |
100 |
gggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgatgtc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3437185 |
gggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaagtgttgtc |
3437088 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 46240194 - 46240383
Alignment:
| Q |
1 |
ctaaagacaaagtatgggg-tcgactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgca |
99 |
Q |
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||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240194 |
ctaaagacaaagtatgggggtcaactgctcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgca |
46240293 |
T |
|
| Q |
100 |
gggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240294 |
gggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggtaa |
46240383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 23541589 - 23541775
Alignment:
| Q |
2 |
taaagacaaagtatgggg-tcgactactcattgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcag |
100 |
Q |
| |
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|||||||||||||||||| || ||| || || | ||||||||| |||||||||||||| || ||||| | |||||||| || || ||||| |||| || |
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| T |
23541589 |
taaagacaaagtatgggggtcaacttctaatagttgttggtagggacccaaatgaccaatattttccattggcatttggaatagtagaaacaaagtgtag |
23541688 |
T |
|
| Q |
101 |
ggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggt |
187 |
Q |
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|| ||||||||| |||||||||||| | | ||||||||||||| | |||| |||||||| |||||||||||||| |||||||| |
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| T |
23541689 |
ggaaagctggaaatggttcatggagcttttaatggatgacattggaagggataggagatatgtcttcatatcagatcaacagaaggt |
23541775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 30038292 - 30038134
Alignment:
| Q |
30 |
attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc |
129 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || || ||||| ||||||| | |||||| |
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| T |
30038292 |
attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaacttggaaatggttcacgcagttgc |
30038193 |
T |
|
| Q |
130 |
tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
188 |
Q |
| |
|
|| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
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|
| T |
30038192 |
tgatggaagatataggtgaagataagagatatgtgttcatatcagatcaacaaaaggta |
30038134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 3921357 - 3921199
Alignment:
| Q |
30 |
attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc |
129 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || ||| ||||| |||||||| |||||| |
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| T |
3921357 |
attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc |
3921258 |
T |
|
| Q |
130 |
tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
188 |
Q |
| |
|
|| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
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|
| T |
3921257 |
tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
3921199 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 29878251 - 29878409
Alignment:
| Q |
30 |
attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc |
129 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||| || || ||||| | |||||||||||||||| || ||| ||||| |||||||| |||||| |
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| T |
29878251 |
attgctgtaggaagagacccaaatgaccagtattttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatacagttgc |
29878350 |
T |
|
| Q |
130 |
tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
188 |
Q |
| |
|
|| |||| || || || ||||||| |||||||| |||||||||||||| || |||||| |
|
|
| T |
29878351 |
tgatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaaggta |
29878409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 188
Target Start/End: Original strand, 6869045 - 6869201
Alignment:
| Q |
30 |
attgctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgc |
129 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| || || ||||| | |||||||||||||||| || ||| ||||| ||||||||| |||||| |
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|
| T |
6869045 |
attgctgtagggagagacccaaatgaccagtactttccactagcttttggggtagttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgc |
6869144 |
T |
|
| Q |
130 |
tgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
188 |
Q |
| |
|
|| |||| || || || ||||| |||| |||| |||||||||||||| || |||||| |
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|
| T |
6869145 |
tgatggaagatataggtcaagat--aagagatgtgttcatatcagatcaacaaaaggta |
6869201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 4497377 - 4497222
Alignment:
| Q |
33 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
132 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| ||| | | |||||||||||| ||||| |||||| || || |
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|
| T |
4497377 |
gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagttgaaagtaaggcaagctggaaatggtttatggagctgttga |
4497278 |
T |
|
| Q |
133 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
188 |
Q |
| |
|
|| ||||||| || || |||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
4497277 |
tgaatgacataggaaatgataaaagatatgtcttcatatcagatcaacagaaggta |
4497222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 18134 - 18289
Alignment:
| Q |
33 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
132 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | |||||||||||| ||||| |||||| || || |
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|
| T |
18134 |
gctgttggaagggaccccaatgaccagtattttcccctggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga |
18233 |
T |
|
| Q |
133 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
188 |
Q |
| |
|
|| ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
18234 |
tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
18289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 24676197 - 24676042
Alignment:
| Q |
33 |
gctgttggtagagacccaaatgaccagtactttcctcttgcatttggcattgttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgt |
132 |
Q |
| |
|
|||||||| || ||||| ||||||||||| ||||| || || ||||| |||||||| || | | |||||||||||| ||||| |||||| || || |
|
|
| T |
24676197 |
gctgttggaagggaccccaatgaccagtattttccactggcctttggtgttgttgaagtagaaagtaaggcaagctggaaatggtttatggagctgttga |
24676098 |
T |
|
| Q |
133 |
tggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaaggta |
188 |
Q |
| |
|
|| ||||||| || || || ||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
24676097 |
tgaatgacataggaaatgacaaaagatatgtcttcatatcagatcaacagaaggta |
24676042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 36915336 - 36915439
Alignment:
| Q |
85 |
ttgaaactgagtgcagggcaagctggaagtggttcatggagttgctgttggatgacattgggaaagataaaagatatgtattcatatcagatcagcagaa |
184 |
Q |
| |
|
||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| || || || ||||||| |||||||| |||||||||||||| || || |
|
|
| T |
36915336 |
ttgaaactgagtgcaaggaaagttggaaatggttcatgcagttgctaatggaagatataggtcaagataagagatatgtgttcatatcagatcaacaaaa |
36915435 |
T |
|
| Q |
185 |
ggta |
188 |
Q |
| |
|
|||| |
|
|
| T |
36915436 |
ggta |
36915439 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 40090 - 40053
Alignment:
| Q |
30 |
attgctgttggtagagacccaaatgaccagtactttcc |
67 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
40090 |
attgttgttggtagagacccaaatgaccagtattttcc |
40053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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