View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_low_38 (Length: 203)
Name: NF0438_1D_low_38
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_38 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 19841132 - 19840933
Alignment:
| Q |
4 |
agtttggtgttggctacacaattagttggtgctattgtctataattatgacaattatgtacacagttgcctatcttttatctgttaatcgaacatgaacc |
103 |
Q |
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| T |
19841132 |
agtttggagttggctacacaattagtcggtgctattgtctataattatgacaattatgtacacagttgcctatcttttatctgttaatcgaacatgaacc |
19841033 |
T |
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| Q |
104 |
ctaatgaatttttctgttgattgagctctgaagcttatttttcttatgagatgaatctccattcttttgatctgtaatgtctaataccaatttatgctga |
203 |
Q |
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| T |
19841032 |
ctaatgaatttttctgttgattgagctctgaagcttatttttcttatgagatgaatctccattcttttgatctgtaatgtctaataccaatttatgctga |
19840933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 73 - 196
Target Start/End: Complemental strand, 19958999 - 19958876
Alignment:
| Q |
73 |
ctatcttttatctgttaatcgaacatgaaccctaatgaatttttctgttgattgagctctgaagcttatttttcttatgagatgaatctccattcttttg |
172 |
Q |
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| T |
19958999 |
ctatcttttatcaattaatcaaacatgaactctaatgaatttttctctcaattgagctctgaagcttatttttcttatgagatgaatcttcattcctttc |
19958900 |
T |
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| Q |
173 |
atctgtaatgtctaataccaattt |
196 |
Q |
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| T |
19958899 |
atctgtgatttctaataccaattt |
19958876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 20030800 - 20030928
Alignment:
| Q |
60 |
tgtacacagttgcctatcttttatctgttaatcgaacatgaaccctaatgaatttttctgttgattgagctctgaagcttatttttcttatgagatgaat |
159 |
Q |
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|||||||| ||| |||||||||||| |||||| ||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||| |
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| T |
20030800 |
tgtacacaattgactatcttttatcaattaatcaaacatgaactctaatgaatttttctctcgattgagct-tgaagcttatttttcttatgcgatgaat |
20030898 |
T |
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| Q |
160 |
ctccattcttttgatctgtaatgtctaata |
189 |
Q |
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| T |
20030899 |
cttcattcctttcatctgtgatttctaata |
20030928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 202
Target Start/End: Complemental strand, 19851552 - 19851461
Alignment:
| Q |
112 |
tttttctgttgattgagctctgaagcttatttttcttatgagatgaatctccattcttttgatc-tgtaatgtctaataccaatttatgctg |
202 |
Q |
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||||||| ||||||||||||| ||||||| ||||||| |||||||||||| ||| | ||||||| ||| || | |||||||||||| ||||| |
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| T |
19851552 |
tttttctcttgattgagctctaaagcttacttttcttctgagatgaatcttcatccctttgatcatgtgatttgtaataccaatttgtgctg |
19851461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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