View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_1D_low_39 (Length: 201)

Name: NF0438_1D_low_39
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_1D_low_39
NF0438_1D_low_39
[»] scaffold0179 (2 HSPs)
scaffold0179 (80-201)||(7655-7776)
scaffold0179 (80-201)||(12589-12710)
[»] chr3 (7 HSPs)
chr3 (80-201)||(26845994-26846115)
chr3 (80-198)||(47537398-47537516)
chr3 (87-198)||(50544354-50544465)
chr3 (80-195)||(48191932-48192047)
chr3 (108-195)||(33121237-33121324)
chr3 (122-166)||(19222260-19222304)
chr3 (80-144)||(43121558-43121622)
[»] chr5 (4 HSPs)
chr5 (80-201)||(20208611-20208732)
chr5 (80-193)||(6049358-6049471)
chr5 (80-201)||(7000657-7000778)
chr5 (80-195)||(4415592-4415707)
[»] chr1 (6 HSPs)
chr1 (80-201)||(26720788-26720909)
chr1 (80-198)||(47106573-47106690)
chr1 (80-182)||(10711053-10711155)
chr1 (80-195)||(17708112-17708227)
chr1 (80-193)||(30110817-30110930)
chr1 (87-198)||(21335269-21335379)
[»] chr6 (7 HSPs)
chr6 (80-198)||(17873710-17873828)
chr6 (80-182)||(11060751-11060853)
chr6 (80-193)||(18051341-18051454)
chr6 (81-193)||(17079084-17079196)
chr6 (80-183)||(9199144-9199247)
chr6 (80-122)||(649958-650000)
chr6 (118-171)||(4474855-4474908)
[»] chr4 (8 HSPs)
chr4 (80-198)||(10563201-10563319)
chr4 (80-193)||(20395731-20395844)
chr4 (82-198)||(53780175-53780291)
chr4 (80-183)||(42778383-42778486)
chr4 (80-195)||(53486845-53486960)
chr4 (80-195)||(30273704-30273819)
chr4 (80-195)||(34322211-34322326)
chr4 (80-184)||(18106448-18106552)
[»] scaffold0007 (1 HSPs)
scaffold0007 (80-193)||(182264-182377)
[»] chr8 (3 HSPs)
chr8 (80-198)||(23680292-23680410)
chr8 (82-198)||(45255722-45255838)
chr8 (80-193)||(17658966-17659079)
[»] chr7 (3 HSPs)
chr7 (80-198)||(7458563-7458681)
chr7 (80-198)||(4077405-4077523)
chr7 (80-195)||(34231832-34231947)
[»] chr2 (2 HSPs)
chr2 (80-184)||(2999640-2999744)
chr2 (80-183)||(1380227-1380330)


Alignment Details
Target: scaffold0179 (Bit Score: 122; Significance: 8e-63; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 7776 - 7655
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7776 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 7677  T
Q  180 atcacttgttgacttcaaatga 201  Q
    ||||||||||||||||||||||    
T  7676 atcacttgttgacttcaaatga 7655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 12710 - 12589
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12710 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 12611  T
Q  180 atcacttgttgacttcaaatga 201  Q
    ||||||||||||||||||||||    
T  12610 atcacttgttgacttcaaatga 12589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 8e-63; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 8e-63
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 26846115 - 26845994
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26846115 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 26846016  T
Q  180 atcacttgttgacttcaaatga 201  Q
    ||||||||||||||||||||||    
T  26846015 atcacttgttgacttcaaatga 26845994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 47537516 - 47537398
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  47537516 tgtagggctttattgactgatgtttttctgctagattttgttttagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgtggttcat 47537417  T
Q  180 atcacttgttgacttcaaa 198  Q
    |||||||| ||||| ||||    
T  47537416 atcacttgctgactacaaa 47537398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 50544465 - 50544354
Alignment:
Q  87 ctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttcttatcactt 186  Q
    |||||||||||||||||||||||||||  | |||||||||||| ||||||||| |||| ||||||| |||||||||| | ||||||||||||||||  ||    
T  50544465 ctttattgactgatgtttctctgcaagaatttgtttcagacagatgggtgtggctgccagaccctggtgagggttactcagttcgcggttcttatctatt 50544366  T
Q  187 gttgacttcaaa 198  Q
    ||||||| ||||    
T  50544365 gttgactacaaa 50544354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 48192047 - 48191932
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| |||||| || |||||| ||||||||||||||||| || |||||| | | ||||||| ||||||| ||||| |    
T  48192047 tgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgggtgtggtttccagaccctttggtgggttactctgttcgtggttcat 48191948  T
Q  180 atcacttgttgacttc 195  Q
    ||||| || |||||||    
T  48191947 atcacatgctgacttc 48191932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 108 - 195
Target Start/End: Original strand, 33121237 - 33121324
Alignment:
Q  108 tgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttcttatcacttgttgacttc 195  Q
    |||||| || |||||| |||||||||||||||||||| |||||| | | ||||||| ||||||| ||||| |||||| || |||||||    
T  33121237 tgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcatatcacatgctgacttc 33121324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 19222260 - 19222304
Alignment:
Q  122 tcagacaggtgggtgtggttgcctgaccctgttgagggttacact 166  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  19222260 tcagacaggtgggtgtggttgccagaccctgttgagggttgcact 19222304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 43121558 - 43121622
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcc 144  Q
    |||||| ||||||||  ||||||||||||||| | |  ||||||||||| |||||| ||||||||    
T  43121558 tgtaggactttattgcttgatgtttctctgcatgctaatgtttcagacaagtgggtttggttgcc 43121622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 20208611 - 20208732
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20208611 tgtagggctttattgactgatgtttctctgcaagtttatgtttcagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgcggttctt 20208710  T
Q  180 atcacttgttgacttcaaatga 201  Q
    ||||||||||||||||||||||    
T  20208711 atcacttgttgacttcaaatga 20208732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 6049471 - 6049358
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||| |||||| || | |||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |    
T  6049471 tgtagggctttattgactgatgtttctttgcaagattttttttccgacaggtgggtgtggttgccagaccctgttaagggttatactgttcgcggttcat 6049372  T
Q  180 atcacttgttgact 193  Q
    |||||||| |||||    
T  6049371 atcacttgctgact 6049358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 80 - 201
Target Start/End: Original strand, 7000657 - 7000778
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||   |||||||||||||||||||||||| |    
T  7000657 tgtagggctttattgattgatgtttctctgctagattctgtttcagacaagtgggtgtggttgccagaccccactgagggttacactgttcgcggttcat 7000756  T
Q  180 atcacttgttgacttcaaatga 201  Q
    ||| |||| ||||  |||||||    
T  7000757 atcgcttgctgaccacaaatga 7000778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 4415592 - 4415707
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||| | | ||||||| ||||||| ||||| |    
T  4415592 tgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcat 4415691  T
Q  180 atcacttgttgacttc 195  Q
    || || ||||||||||    
T  4415692 attacatgttgacttc 4415707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 26720909 - 26720788
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||    
T  26720909 tgtagggctttattgactgatgtttctctgcaagtttttgtttcagacaggtgggtgtggtcgtcagaccctgttgagggttacactgttcgcggttctt 26720810  T
Q  180 atcacttgttgacttcaaatga 201  Q
    ||||||||||||||||||||||    
T  26720809 atcacttgttgacttcaaatga 26720788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 47106573 - 47106690
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||||||||||| |  |||||||||||||| |    
T  47106573 tgtagggctttattgactgatgtttctttgcaagattttgtttccgacaggtgggtgtggttgccagaccctgttgaggggt-tactgttcgcggttcat 47106671  T
Q  180 atcacttgttgacttcaaa 198  Q
    |||||||| ||||| ||||    
T  47106672 atcacttgctgactacaaa 47106690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 10711053 - 10711155
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||| ||||||| |||||||||||| | |||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |    
T  10711053 tgtaggactttattaactgatgtttctttccaagattttgtttcagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgtggttcat 10711152  T
Q  180 atc 182  Q
    |||    
T  10711153 atc 10711155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 17708227 - 17708112
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| |||||| || |||||||||||| ||||||||||||||  ||||| ||| ||||||| ||||||| ||||| |    
T  17708227 tgtagggccttattgactgatgtttctttgcaagattttgtttcagacagatgggtgtggttgccaaacccttttgtgggttactctgttcgtggttcat 17708128  T
Q  180 atcacttgttgacttc 195  Q
    ||||| || |||||||    
T  17708127 atcacatgctgacttc 17708112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 30110817 - 30110930
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||  ||||||||||||||||| |||| || ||||||||| |||||||||||||| || |||||| ||||||| ||||| ||||| ||||| |    
T  30110817 tgtagggcttctttgactgatgtttctctacaagattttgtttcagataggtgggtgtggttaccagacccttttgaggggtacacagttcggggttcat 30110916  T
Q  180 atcacttgttgact 193  Q
    ||||| || |||||    
T  30110917 atcacatgctgact 30110930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 21335269 - 21335379
Alignment:
Q  87 ctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttcttatcactt 186  Q
    ||||||||  |||||||||| |||| | |  |||||||||||||||||| |||||||  |||||| |||| || ||| | |||||||| ||||||||| |    
T  21335269 ctttattgcttgatgtttctttgcaggctaatgtttcagacaggtgggtatggttgcaggacccttttgaagggtactcagttcgcgg-tcttatcacct 21335367  T
Q  187 gttgacttcaaa 198  Q
    ||||||| ||||    
T  21335368 gttgactacaaa 21335379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 17873710 - 17873828
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||| || ||||||||||||||||||||||||    
T  17873710 tgtagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttctt 17873809  T
Q  180 atcacttgttgacttcaaa 198  Q
    |||||||||||||||||||    
T  17873810 atcacttgttgacttcaaa 17873828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 11060751 - 11060853
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||| ||||||||||||| ||||||||| || || |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11060751 tgtagggatttattgactgatatttctctgctagattatgtttctgacaggtgggtgtggttgcctgacccttttgagggttacactgttcgcggttctt 11060850  T
Q  180 atc 182  Q
    |||    
T  11060851 atc 11060853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 18051341 - 18051454
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||||||||||||| |||||| | |||||| || | ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  18051341 tgtagggctttattgactaatgtttatttgcaagattttatttcagacaggtgggtgtggttgtctgaccctgttgagggttacactgttcgtggttctt 18051440  T
Q  180 atcacttgttgact 193  Q
    ||||| || |||||    
T  18051441 atcacatggtgact 18051454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 17079084 - 17079196
Alignment:
Q  81 gtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctta 180  Q
    |||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||| |||| |||||||||||| |||||||| ||||| ||    
T  17079084 gtagggctttattgactgatgtttctttgcaagattttgtttcagacaagtgggtgtggttgccagaccttgttgagggttatactgttcgtggttcata 17079183  T
Q  181 tcacttgttgact 193  Q
    |||| || |||||    
T  17079184 tcacatgctgact 17079196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 9199144 - 9199247
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| ||| || ||||||||||||||||||||| |||||||| |||| | ||| ||||||| ||||||||||||| |    
T  9199144 tgtagggcattattgactgatgtttctttgcgagattctgtttcagacaggtgggtttggttgccagaccatattgtgggttactctgttcgcggttcat 9199243  T
Q  180 atca 183  Q
    ||||    
T  9199244 atca 9199247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 649958 - 650000
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgttt 122  Q
    ||||||||||||||||||||||||||| |||||| || |||||    
T  649958 tgtagggctttattgactgatgtttctttgcaagattttgttt 650000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 4474908 - 4474855
Alignment:
Q  118 tgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcg 171  Q
    |||||||||||| |||||||||||  |||||||||| | |||||| ||||||||    
T  4474908 tgtttcagacagatgggtgtggttatctgaccctgtggggggttatactgttcg 4474855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 10563201 - 10563319
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| || ||| || ||||||||||||||||||||||||    
T  10563201 tgtagggctttattgactgatgtttctctgcaagattttgttttagacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttctt 10563300  T
Q  180 atcacttgttgacttcaaa 198  Q
    |||||||||||||||||||    
T  10563301 atcacttgttgacttcaaa 10563319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 20395844 - 20395731
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20395844 tgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgtggttctt 20395745  T
Q  180 atcacttgttgact 193  Q
    ||||| || |||||    
T  20395744 atcacatgctgact 20395731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 53780291 - 53780175
Alignment:
Q  82 tagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttcttat 181  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||| || |||||||||||||||||||||| |||    
T  53780291 tagggctttattgactgatgtttctctgcaagattttgtttcagacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttcatat 53780192  T
Q  182 cacttgttgacttcaaa 198  Q
    |||||||||||||||||    
T  53780191 cacttgttgacttcaaa 53780175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 42778486 - 42778383
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||| |||||||| |||||||| || ||| ||| ||||||| ||||||||||||| |    
T  42778486 tgtagggccttattgactgatgtttctttgcaagattctgtttcagataggtgggtttggttgccagatcctattgtgggttactctgttcgcggttcat 42778387  T
Q  180 atca 183  Q
    ||||    
T  42778386 atca 42778383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 53486845 - 53486960
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| ||| || || ||||||||||||||| ||||||||||| |||||| ||| ||||||| ||||||| ||||| |    
T  53486845 tgtagggccttattgactgatgtttctttgcgagattttgtttcagacaggtgagtgtggttgccagaccctattgtgggttactctgttcgtggttcat 53486944  T
Q  180 atcacttgttgacttc 195  Q
    ||||| || |||||||    
T  53486945 atcacatgctgacttc 53486960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 30273704 - 30273819
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| ||||||| |||| ||| | |||||| || ||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||| |    
T  30273704 tgtagggccttattgattgatatttttttgcaagattttgtttcagacaggtgggtgtggttgccagacccttttgtgggttactctgttcgtggttcat 30273803  T
Q  180 atcacttgttgacttc 195  Q
    ||||| || |||||||    
T  30273804 atcacatgctgacttc 30273819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 34322211 - 34322326
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||| || |||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||| | | ||||||| ||||||| ||||| |    
T  34322211 tgtagagccttattgactgatgtttctttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcgtggttcat 34322310  T
Q  180 atcacttgttgacttc 195  Q
    ||||| || |||||||    
T  34322311 atcacatgctgacttc 34322326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 18106448 - 18106552
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||| | | ||||||| ||||||  ||||| |    
T  18106448 tgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcttggttcat 18106547  T
Q  180 atcac 184  Q
    |||||    
T  18106548 atcac 18106552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 182377 - 182264
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  182377 tgtagggctttattgactgatgtttctttgcaagattttgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgtggttctt 182278  T
Q  180 atcacttgttgact 193  Q
    ||||| || |||||    
T  182277 atcacatgctgact 182264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 6e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 23680410 - 23680292
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  23680410 tgtagggctttattgactgatgtttctttgctagattctgtttcagacaggtgggtgtggttgccagaccctgttgagggttacactgttcgcggttcat 23680311  T
Q  180 atcacttgttgacttcaaa 198  Q
    ||||| || ||||| ||||    
T  23680310 atcacctgctgactacaaa 23680292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 45255722 - 45255838
Alignment:
Q  82 tagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttcttat 181  Q
    ||||| ||| ||| ||||||||||| |||||| || ||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||    
T  45255722 tagggttttgttggctgatgtttctttgcaagattttgtttcagacaggtgggtgtggttgccagaccctattgagggctatactgttcgcggttcttat 45255821  T
Q  182 cacttgttgacttcaaa 198  Q
    |||||| ||||| ||||    
T  45255822 cacttgctgactacaaa 45255838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 17659079 - 17658966
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    ||||||| ||||||||||||||||||||||| || || |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| | ||||| |    
T  17659079 tgtagggttttattgactgatgtttctctgctagattttgtttctgacaggtgggtgtggttgcttgaccctattgagggttacactgtttgtggttcat 17658980  T
Q  180 atcacttgttgact 193  Q
    |||  |||||||||    
T  17658979 atcgtttgttgact 17658966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 6e-42; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 7458563 - 7458681
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||||||||| || ||| || ||||||||||||||||||||||||    
T  7458563 tgtagggctttattaactaatgtttctctgcaagattctgtttccgacaggtgggtgtggttgccagatcctattcagggttacactgttcgcggttctt 7458662  T
Q  180 atcacttgttgacttcaaa 198  Q
    |||||||||||||||||||    
T  7458663 atcacttgttgacttcaaa 7458681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 4077523 - 4077405
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||||||||||  |||||| ||| |||||| || ||| ||||||||||||||||||||||  ||||||| |||||| || || |||||||||||||    
T  4077523 tgtagggctttattgtttgatgtgtctttgcaagattttgtgtcagacaggtgggtgtggttgctagaccctgctgagggctatacagttcgcggttctt 4077424  T
Q  180 atcacttgttgacttcaaa 198  Q
    |||||||||||||| ||||    
T  4077423 atcacttgttgactacaaa 4077405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 34231947 - 34231832
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| ||||||| |||||||||| |||||| || |||||| |||||||||||||||||||| |||||| | |  |||||| ||||||| ||||| |    
T  34231947 tgtagggccttattgaatgatgtttctttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtaggttactctgttcgtggttcat 34231848  T
Q  180 atcacttgttgacttc 195  Q
    ||||| || |||||||    
T  34231847 atcacatgctgacttc 34231832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 2999640 - 2999744
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||||||| |||||||||||||||||| |||||| || |||||| |||||||||||||||||||| |||||| | | ||||||| ||||||  ||||| |    
T  2999640 tgtagggccttattgactgatgtttctttgcaagattttgtttccgacaggtgggtgtggttgccagaccctttggtgggttactctgttcttggttcat 2999739  T
Q  180 atcac 184  Q
    |||||    
T  2999740 atcac 2999744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 1380330 - 1380227
Alignment:
Q  80 tgtagggctttattgactgatgtttctctgcaagtttctgtttcagacaggtgggtgtggttgcctgaccctgttgagggttacactgttcgcggttctt 179  Q
    |||| ||| |||||||||||||||||| |||||| || ||||||||| |||||||| |||||||| || ||| ||| ||||||| ||||||||||||| |    
T  1380330 tgtaaggccttattgactgatgtttctttgcaagattatgtttcagataggtgggtttggttgccagatcctattgtgggttactctgttcgcggttcat 1380231  T
Q  180 atca 183  Q
    ||||    
T  1380230 atca 1380227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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