View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_1D_low_9 (Length: 389)
Name: NF0438_1D_low_9
Description: NF0438_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_1D_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 46429387 - 46429750
Alignment:
| Q |
22 |
caacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagatgttatacctcccaatctct-aagtccctcatgcaataccgccaga |
120 |
Q |
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| T |
46429387 |
caacatagccgtctataattattagaatgttagcaggcagcgatcaaaccaagacgttatacctcccaatctcttaagtccctcatgcaataccgccaga |
46429486 |
T |
|
| Q |
121 |
atcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgtagg |
220 |
Q |
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| T |
46429487 |
atcaccttatgactccctcgacaattttaacattgattgggtccaagtgctcttcacaccgtcaaaacttttagagaagcacatttaactaaaacgtagg |
46429586 |
T |
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| Q |
221 |
acatgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaactt-------------caacaagtagatg |
307 |
Q |
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| T |
46429587 |
acatgaaaagagcattcagatcattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacagataaatgcaacaggtagatg |
46429686 |
T |
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| Q |
308 |
attgtgtaataatctact-nnnnnnnctgttttcatgtagagggaccatgactatctcattgat |
370 |
Q |
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| T |
46429687 |
attgtgtaataatctactaaaaaaaactgctttcatgtagagggaccatgactatctcattgat |
46429750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 46426146 - 46426204
Alignment:
| Q |
242 |
cattcttcacaaatgtcaagaagtaactctggtaaatagtaaacttaaaacttcaacaa |
300 |
Q |
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| T |
46426146 |
cattcatcagaaatgtcaagaagtaagtcaggtaaatagtaaatttaacacttcaacaa |
46426204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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