View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_2D_high_24 (Length: 248)

Name: NF0438_2D_high_24
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_2D_high_24
NF0438_2D_high_24
[»] chr3 (49 HSPs)
chr3 (79-229)||(9838401-9838551)
chr3 (79-229)||(9849279-9849429)
chr3 (79-229)||(10076806-10076956)
chr3 (79-229)||(10376224-10376374)
chr3 (83-227)||(10088334-10088478)
chr3 (79-229)||(10580141-10580291)
chr3 (83-227)||(10195217-10195361)
chr3 (79-229)||(10434423-10434573)
chr3 (1-85)||(9838263-9838347)
chr3 (1-85)||(9849141-9849225)
chr3 (1-85)||(10580003-10580087)
chr3 (79-229)||(8860826-8860976)
chr3 (79-166)||(10085648-10085735)
chr3 (79-166)||(10192568-10192655)
chr3 (1-85)||(10376428-10376512)
chr3 (80-197)||(10364209-10364326)
chr3 (1-85)||(10364381-10364465)
chr3 (1-85)||(10434627-10434711)
chr3 (1-85)||(10088192-10088276)
chr3 (1-85)||(10195075-10195159)
chr3 (86-208)||(11149254-11149376)
chr3 (17-82)||(10076671-10076736)
chr3 (83-208)||(10888850-10888975)
chr3 (79-208)||(11160417-11160546)
chr3 (22-85)||(10505187-10505250)
chr3 (83-229)||(11131405-11131551)
chr3 (1-62)||(11768659-11768720)
chr3 (83-207)||(11768778-11768902)
chr3 (11-85)||(13170433-13170507)
chr3 (11-85)||(13332306-13332380)
chr3 (18-85)||(13289067-13289134)
chr3 (148-207)||(13289274-13289333)
chr3 (148-207)||(13332513-13332572)
chr3 (11-85)||(13160382-13160456)
chr3 (11-85)||(13343491-13343565)
chr3 (148-207)||(13160589-13160648)
chr3 (148-207)||(13170640-13170699)
chr3 (1-57)||(10084150-10084206)
chr3 (79-207)||(10126456-10126584)
chr3 (1-57)||(10191073-10191129)
chr3 (148-207)||(10260295-10260354)
chr3 (109-204)||(10526929-10527024)
chr3 (148-207)||(13343698-13343757)
chr3 (1-50)||(10888743-10888792)
chr3 (1-50)||(11131609-11131658)
chr3 (1-50)||(11149437-11149486)
chr3 (109-165)||(10517058-10517114)
chr3 (109-165)||(10541544-10541600)
chr3 (109-165)||(11782422-11782478)
[»] scaffold0083 (2 HSPs)
scaffold0083 (83-227)||(50186-50330)
scaffold0083 (1-83)||(50388-50470)
[»] chr2 (3 HSPs)
chr2 (79-229)||(26906437-26906587)
chr2 (1-85)||(26906299-26906383)
chr2 (20-66)||(3438535-3438581)
[»] chr8 (3 HSPs)
chr8 (1-84)||(44958261-44958344)
chr8 (79-208)||(44958109-44958238)
chr8 (111-207)||(11484589-11484685)
[»] chr6 (1 HSPs)
chr6 (87-208)||(31680139-31680260)
[»] scaffold0002 (4 HSPs)
scaffold0002 (11-85)||(136481-136555)
scaffold0002 (11-85)||(146532-146606)
scaffold0002 (148-207)||(136289-136348)
scaffold0002 (148-207)||(146340-146399)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 9838401 - 9838551
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838401 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 9838500  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838501 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 9838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 9849279 - 9849429
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849279 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 9849378  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849379 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 9849429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 10076806 - 10076956
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  10076806 tgcagaggagaagcagatcagcaatccccatgtcagacagtggcttgataacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagt 10076905  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  10076906 tacgattcactgcgatgcaaggtggagaatgcacaagctcaaaacaaaact 10076956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 10376374 - 10376224
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    |||||||||||||||||||| ||||||   |||||| || ||||||||| |||||||||||| | |||||||||||||||| |||||||| |||||||||    
T  10376374 tgcagaggagaagcagatcatcaatccttctgtcaagcaatggcttgatgacttgaaagatgctatctttgatgctgaggacttgctcaatgaaatcagt 10376275  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376274 tatgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 10376224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 10088334 - 10088478
Alignment:
Q  83 gaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacg 182  Q
    |||||||||||||||| ||||||   ||||||||  ||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||| |    
T  10088334 gaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatg 10088433  T
Q  183 attccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaa 227  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  10088434 attcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaa 10088478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 10580141 - 10580291
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    ||||||||||||||||||||  |||||   ||||||||  ||||||||| |||||||||||| | || ||||||||||||| |||||||| |||||||||    
T  10580141 tgcagaggagaagcagatcaataatcctgctgtcaaactatggcttgatgacttgaaagatgctatcattgatgctgaggacttgctcaatgaaatcagt 10580240  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  10580241 tacgattccctgcgatgcaaggtggagaatacacaagctcaaaacaaaact 10580291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 10195217 - 10195361
Alignment:
Q  83 gaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacg 182  Q
    |||||||||||||||| ||||||   ||||||||  ||||||||| |||||||||||| |||||||||||||||||| ||| ||| |||||||||||| |    
T  10195217 gaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgttcagcgaaatcagttatg 10195316  T
Q  183 attccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaa 227  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  10195317 attcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaa 10195361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 10434573 - 10434423
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    |||||||||||||||||||| ||| ||   ||||||||| ||||||||| |||||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  10434573 tgcagaggagaagcagatcaacaaacctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggacttgctcaacgaaatcagt 10434474  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    || |||||||| |||| ||||||||||||| || | |||||||||||||||    
T  10434473 tatgattcccttcgatccaaggtggagaatacacatgctcaaaacaaaact 10434423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9838347 - 9838263
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838347 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 9838263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 9849225 - 9849141
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849225 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 9849141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10580087 - 10580003
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580087 tgagacattgagcttagtgtttttgatgtaatcaagaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 10580003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 8860826 - 8860976
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    |||||||||||||||||||| |||||    ||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||    
T  8860826 tgcagaggagaagcagatcaacaatcgtgctgtcaaacaatggcttgatgacttgaaagatgctctctttgatgctgaggatttgctcaaccaaatcagt 8860925  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    || |||||  | ||||||||||||||| || || |||||  ||||||||||    
T  8860926 tatgattcattacgatgcaaggtggaggatacacaagctgcaaacaaaact 8860976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 10085648 - 10085735
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctc 166  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10085648 tgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagatgttttctttgatgctgaagatttgctc 10085735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 10192568 - 10192655
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctc 166  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  10192568 tgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagatgttttctttgatgctgaagatttgctc 10192655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10376428 - 10376512
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    |||||||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10376428 tgagacattgagtttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcagag 10376512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 10364326 - 10364209
Alignment:
Q  80 gcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagtt 179  Q
    ||||| ||||||||||||| ||||||   ||||||||| |||||||||  ||||||||||| |||||||||||| |||||||||||  ||||||||||||    
T  10364326 gcagaagagaagcagatcaacaatcctgctgtcaaacaatggcttgatggcttgaaagatgctgtctttgatgccgaggatttgcttcacgaaatcagtt 10364227  T
Q  180 acgattccctgcgatgca 197  Q
    | ||||||||||||||||    
T  10364226 atgattccctgcgatgca 10364209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10364381 - 10364465
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    |||| ||||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10364381 tgagtcattgagtttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcagag 10364465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 10434627 - 10434711
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    |||| |||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  10434627 tgagtcattgagcttggtgtttttgatgtaatcacgaaactcttttgaagcaagtttctcaactaaggtttgaacagttgcagag 10434711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10088276 - 10088192
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  10088276 tgagacattcaacttggtgtttttgatgtaatcacgaaactctgttgaagcaagtttctcaaccaaggtctgaatagttgcagag 10088192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10195159 - 10195075
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||    
T  10195159 tgagacattcaacttggtgtttttgatgtaatcacgaaactctgttgaagcaagtttctcaaccaaggtctgaatagttgcagag 10195075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 208
Target Start/End: Complemental strand, 11149376 - 11149254
Alignment:
Q  86 gagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgatt 185  Q
    ||||||||||||| ||||||   ||||||||| ||||||||| |||||||||||| | |||||||||| ||||||||||| ||  |||| ||||| || |    
T  11149376 gagaagcagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgccgaggatttgctgaatcaaattagttatgaat 11149277  T
Q  186 ccctgcgatgcaaggtggagaat 208  Q
    | |||||||||||||||||||||    
T  11149276 cactgcgatgcaaggtggagaat 11149254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 10076736 - 10076671
Alignment:
Q  17 gtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgca 82  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  10076736 gtgtttttgatgtaatcaagaaactcagttgaagtaagtttctcaactaaggtctgaacagttgca 10076671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 83 - 208
Target Start/End: Original strand, 10888850 - 10888975
Alignment:
Q  83 gaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacg 182  Q
    |||||||||||||||| ||| |    ||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||| ||| |||| ||||| |    
T  10888850 gaggagaagcagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggaggatttgctgaaccaaattagttatg 10888949  T
Q  183 attccctgcgatgcaaggtggagaat 208  Q
    | ||  ||||||||||||||||||||    
T  10888950 aatcattgcgatgcaaggtggagaat 10888975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 11160546 - 11160417
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    ||||||||||||| |||||| ||| |    ||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||| ||  |||| |||    
T  11160546 tgcagaggagaagtagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgctgaatcaaattagt 11160447  T
Q  179 tacgattccctgcgatgcaaggtggagaat 208  Q
    || || || |||||||||||||||||||||    
T  11160446 tatgaatcactgcgatgcaaggtggagaat 11160417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 10505250 - 10505187
Alignment:
Q  22 tttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  10505250 tttgatgtaatcacgaaactctgttgaagcaagtttgtcaactaaggtctgaacagttgcagag 10505187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 229
Target Start/End: Complemental strand, 11131551 - 11131405
Alignment:
Q  83 gaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacg 182  Q
    |||||||||||||||| ||| |    ||||||| | ||| ||||| |||||||||||| | |||||||||| ||||||||||| ||  |||| ||||| |    
T  11131551 gaggagaagcagatcaacaaccgtgctgtcaaaaaatgggttgatgacttgaaagatgctatctttgatgcggaggatttgctgaatcaaattagttatg 11131452  T
Q  183 attccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    | || ||||||||||||||||||||| || |||||  ||||||||||    
T  11131451 agtcactgcgatgcaaggtggagaatacacaagctgcaaacaaaact 11131405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 11768720 - 11768659
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaa 62  Q
    ||||||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||    
T  11768720 tgagacattcagcttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaa 11768659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 11768778 - 11768902
Alignment:
Q  83 gaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacg 182  Q
    |||||||||||||| | |||||    ||||||||| ||||||||| |||||||||| | | ||||||||||||||||||| ||| |  |||| ||||| |    
T  11768778 gaggagaagcagatgaacaatcttgctgtcaaacaatggcttgatgacttgaaagacgctatctttgatgctgaggatttactcgatcaaataagttatg 11768877  T
Q  183 attccctgcgatgcaaggtggagaa 207  Q
    | ||||| ||||||||| |||||||    
T  11768878 actccctccgatgcaagatggagaa 11768902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 13170507 - 13170433
Alignment:
Q  11 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||||    
T  13170507 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagag 13170433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 13332380 - 13332306
Alignment:
Q  11 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||||    
T  13332380 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagag 13332306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 13289134 - 13289067
Alignment:
Q  18 tgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||| |||||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||||    
T  13289134 tgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagag 13289067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 13289274 - 13289333
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||    
T  13289274 tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaa 13289333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 13332513 - 13332572
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||    
T  13332513 tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaa 13332572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 13160456 - 13160382
Alignment:
Q  11 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||| ||||||| ||||||||||| ||||||    
T  13160456 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagag 13160382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 13343565 - 13343491
Alignment:
Q  11 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||| |||||| | |||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||||    
T  13343565 agcttggtgtttcttatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagag 13343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 13160589 - 13160648
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||| | |||||||||    
T  13160589 tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaa 13160648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 13170640 - 13170699
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||| ||| |||||| |||||| ||||| ||||| |||||||||||    
T  13170640 tgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaa 13170699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10084206 - 10084150
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagttt 57  Q
    |||||||||  |||| |||||||||||||||||| |||| || ||||||||||||||    
T  10084206 tgagacatttggcttggtgtttttgatgtaatcaagaaaatctgttgaagcaagttt 10084150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 10126456 - 10126584
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    |||||||||||||||||||  ||| |||    ||||||| ||||| |||   || |||||||   ||| |||||||||||||||||||||  |||||||     
T  10126456 tgcagaggagaagcagatcctcaaacccagaatcaaacaatggctggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagc 10126555  T
Q  179 tacgattccctgcgatgcaaggtggagaa 207  Q
    ||| || |||| ||||||||| |||||||    
T  10126556 tacaatgccctacgatgcaagctggagaa 10126584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10191129 - 10191073
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagttt 57  Q
    |||||||||  |||| |||||||||||||||||| |||| || ||||||||||||||    
T  10191129 tgagacatttggcttggtgtttttgatgtaatcaagaaaatctgttgaagcaagttt 10191073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 10260295 - 10260354
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||||||  ||||||| ||| || |||| ||||||||| |||||||    
T  10260295 tgatgctgaggatttgctcaataaaatcagctacaatgccctacgatgcaagctggagaa 10260354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 10526929 - 10527024
Alignment:
Q  109 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtgga 204  Q
    ||||||||| |||||| || ||||||||||||   | ||||||||||| ||||||||  ||  |||||| |||||| | ||||| |||||||||||    
T  10526929 tgtcaaacaatggcttcatgacttgaaagatgcaatatttgatgctgaagatttgcttgacttaatcagctacgatgctctgcggtgcaaggtgga 10527024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 13343698 - 13343757
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||| ||| ||||||  ||||| ||||||||||| | |||||||||    
T  13343698 tgatgctgaggatttgcttaaccaaatcaactacgactccctgcgatgtacggtggagaa 13343757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10888792 - 10888743
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaag 50  Q
    ||||||||| |||||  |||| |||||| |||||||||||||||||||||    
T  10888792 tgagacattcagctttttgttgttgatgaaatcacgaaactcagttgaag 10888743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11131609 - 11131658
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaag 50  Q
    ||||||||| |||||  |||| |||||| |||||||||||||||||||||    
T  11131609 tgagacattcagctttttgttgttgatgaaatcacgaaactcagttgaag 11131658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11149437 - 11149486
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaag 50  Q
    ||||||||| |||||  |||| |||||| |||||||||||||||||||||    
T  11149437 tgagacattcagctttttgttgttgatgaaatcacgaaactcagttgaag 11149486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 10517058 - 10517114
Alignment:
Q  109 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct 165  Q
    ||||||||| ||||||||| ||||||||||||   |||||||| |||| ||||||||    
T  10517058 tgtcaaacaatggcttgatgacttgaaagatgcaatctttgattctgaagatttgct 10517114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 10541544 - 10541600
Alignment:
Q  109 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct 165  Q
    |||||| || ||||||||| ||||||||||||   ||||||||||||| ||||||||    
T  10541544 tgtcaagcaatggcttgatgacttgaaagatgcaatctttgatgctgaagatttgct 10541600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 11782478 - 11782422
Alignment:
Q  109 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct 165  Q
    ||||||||| ||||||||| ||||||||||||   | ||||||||||| ||||||||    
T  11782478 tgtcaaacaatggcttgatgacttgaaagatgcaatatttgatgctgaagatttgct 11782422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 50330 - 50186
Alignment:
Q  83 gaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacg 182  Q
    |||||||||||||||| ||||||   ||||||||  ||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||| |    
T  50330 gaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatgctgaggacttgctcagcgaaatcagttatg 50231  T
Q  183 attccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaa 227  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  50230 attccctgcgatgcaaggtggagaatgcaaaagctcaaagcaaaa 50186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 50388 - 50470
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcag 83  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50388 tgagacattgagcttagtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtctgaacagttgcag 50470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 229
Target Start/End: Original strand, 26906437 - 26906587
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    |||||||||||| ||||||| ||||||   ||||||||| ||||||||| |||||||||||| | ||||||||| |||||| |||||||||||||| |||    
T  26906437 tgcagaggagaaacagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgttgaggacttgctcaacgaaattagt 26906536  T
Q  179 tacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 229  Q
    || ||||||||||||||||| || |||||| || |||||||||||||||||    
T  26906537 tatgattccctgcgatgcaaagtcgagaatacacaagctcaaaacaaaact 26906587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26906383 - 26906299
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||||||||||||| |||||||||||||||||| ||||||  |||||| |||||||||||||||| ||||||||| ||||||||    
T  26906383 tgagacattgagcttggtgtttttgatgtaatcaagaaactgtgttgaaacaagtttctcaactaaagtctgaacaattgcagag 26906299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 3438535 - 3438581
Alignment:
Q  20 tttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaa 66  Q
    ||||||||||||||| |||| || | |||||||||||||||||||||    
T  3438535 tttttgatgtaatcaagaaaatccgatgaagcaagtttctcaactaa 3438581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 44958261 - 44958344
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcaga 84  Q
    ||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  44958261 tgagacattgatcttggtgtttttgatgtaatcaagaaactctgttgaagcaagtttctcaactaaggtttgaacagttgcaga 44958344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 44958238 - 44958109
Alignment:
Q  79 tgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagt 178  Q
    ||||||||||||||| |||| ||| |    ||||||||| ||||||||| |||||||| ||    | |||||||| ||||||||||||||| |||| ||     
T  44958238 tgcagaggagaagcaaatcaccaaccttactgtcaaacaatggcttgatgacttgaaaaatacaatatttgatgccgaggatttgctcaaccaaattagc 44958139  T
Q  179 tacgattccctgcgatgcaaggtggagaat 208  Q
    || ||||||||||| ||||| |||||||||    
T  44958138 tatgattccctgcgttgcaaagtggagaat 44958109  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 11484589 - 11484685
Alignment:
Q  111 tcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    ||||||| |||||||||   ||||||||||   |||||||||||||||||||||| || |||||||| || ||| || ||||||||||||| |||||    
T  11484589 tcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgcttaatgaaatcagctatgatgccttgcgatgcaaggtagagaa 11484685  T

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Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 31680260 - 31680139
Alignment:
Q  87 agaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattc 186  Q
    |||||||||||| |||||  | ||||||||| ||||||||| | ||||||||||   | | |||||||||||||||||||||| | |||||||| ||||     
T  31680260 agaagcagatcaacaatcttcctgtcaaacaatggcttgatgagttgaaagatgcaatatatgatgctgaggatttgctcaaccagatcagttatgattg 31680161  T
Q  187 cctgcgatgcaaggtggagaat 208  Q
    |||  || ||||||||||||||    
T  31680160 ccttagaagcaaggtggagaat 31680139  T

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Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 136481 - 136555
Alignment:
Q  11 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||||||||||| ||||||||||| ||||||    
T  136481 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttctcaactaaagtctgaacagtagcagag 136555  T

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Target: scaffold0002; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 146532 - 146606
Alignment:
Q  11 agcttagtgtttttgatgtaatcacgaaactcagttgaagcaagtttctcaactaaggtctgaacagttgcagag 85  Q
    ||||| |||||| |||||||||||| ||||||   ||||||||||||| ||||||| ||||||||||| ||||||    
T  146532 agcttggtgtttctgatgtaatcacaaaactcttgtgaagcaagtttcgcaactaaagtctgaacagtagcagag 146606  T

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Target: scaffold0002; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 136348 - 136289
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||| ||| |||||| |||||| ||||| ||||| |||||||||||    
T  136348 tgatgctgaggatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaa 136289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 146399 - 146340
Alignment:
Q  148 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 207  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||| | |||||||||    
T  146399 tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaa 146340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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