View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_2D_low_10 (Length: 517)

Name: NF0438_2D_low_10
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_2D_low_10
NF0438_2D_low_10
[»] chr5 (6 HSPs)
chr5 (1-501)||(24651135-24651638)
chr5 (134-505)||(24653272-24653654)
chr5 (286-375)||(29418563-29418655)
chr5 (34-82)||(18175239-18175287)
chr5 (32-83)||(27278768-27278819)
chr5 (32-83)||(33729808-33729859)
[»] chr3 (4 HSPs)
chr3 (32-83)||(49019213-49019264)
chr3 (32-83)||(43566810-43566861)
chr3 (32-82)||(4478383-4478433)
chr3 (34-83)||(20221466-20221515)
[»] chr4 (4 HSPs)
chr4 (32-83)||(11872903-11872954)
chr4 (32-83)||(22158277-22158328)
chr4 (47-80)||(25259493-25259526)
chr4 (31-83)||(47416497-47416549)
[»] chr1 (4 HSPs)
chr1 (36-83)||(3569078-3569125)
chr1 (34-77)||(51718166-51718209)
chr1 (32-82)||(49916470-49916520)
chr1 (42-82)||(44746284-44746324)
[»] chr7 (1 HSPs)
chr7 (46-83)||(21461666-21461703)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 24651135 - 24651638
Alignment:
Q  1 ttttctcctaaatcaaaatttgattcttctgattattatacgtaggggtcggggttcgaatctcagacatcctacttattcacattgnnnnnnntgtgaa 100  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||  |||||||||| ||||||||||||||         ||||    
T  24651135 ttttatcctaaatcaaaatgtgattcttctgattattatatgtaggggttggggttcgaacttcagacatcccacttattcacattgaaaaaaagatgaa 24651234  T
Q  101 ttttaactactagattattcgacnnnnnnnnnn---gtatgtttattttaaataaatacttaataaattgataactttatttaacnnnnnnn-ttgataa 196  Q
    || ||| |||||||||||| |||             |||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||    
T  24651235 ttctaattactagattatttgaccaaaaaaaaaaatgtatgtttattttaaataaatacttaataaattggtaactttatttaacaaaaaaaattgataa 24651334  T
Q  197 gtttattaaatgttttccttcaaaaaagactttattaaatgtttgcaaattaattatgtatcaactggaattagatttagccgaagaaattaaactctcg 296  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24651335 ctttattaaatgttttccttcaaaaaagactttattaaatgtttgcaaattaattatgtatcaactggaattagatttagccgaagaaattaaactctcg 24651434  T
Q  297 gcagatattgtctctaataagattagctctcactaatatttatttttgaaataattagctatcactaaatgaaacttatnnnnnnnttaaaattaatttg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||       ||||||||||||||    
T  24651435 gcagatattgtctctaataagattagctctcactaatatttatttttgaaataattagctatcactaaatgcaacttataaaaaaattaaaattaatttg 24651534  T
Q  397 agtgtaggtaacttataggaataaagttttatagaataaattacaacatatcatatttgtttgtatatttaaacaatttaatgttaatggtcacgatata 496  Q
     |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24651535 tgtgtaggtaacttataggaataaactttt-tagaataaattacaacatatcatatttgtttgtatatttaaacaatttaatgttaatggtcatgatata 24651633  T
Q  497 tgatg 501  Q
    |||||    
T  24651634 tgatg 24651638  T

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Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 134 - 505
Target Start/End: Original strand, 24653272 - 24653654
Alignment:
Q  134 gtatgtttattttaaataaatacttaataaattgataactttatttaacnnnnnnnttgataagtttattaaatgttttccttcaaaaaagactttatta 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||| ||||||| |||| |||||||||    
T  24653272 gtatgtttattttaaataaatacttaataaattgataactttatttaacaaaaaaattgataactttattaaatgttatccttcataaaaaactttatta 24653371  T
Q  234 aatgtttgcaaattaattatgtatcaactggaattagatttagccgaagaaattaaactctcggcagatattgtctctaataagattagctctcactaa- 332  Q
    | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  24653372 agtgtttgcaaattaattatgtgtcaactggaattagatttagccgaagaaattaaactctcgggagatattgtctctaataagattagctctcactaat 24653471  T
Q  333 ---tatttatttttgaaataattagctatcactaaatg-aaactt--atnnnnnnnttaaaattaatttgagtgtaggtaacttataggaataa----ag 422  Q
       ||||||||||||||||||||||||||||||||||| ||||||  |        ||||||| |||||| || ||||||||||||||||||||          
T  24653472 atttatttatttttgaaataattagctatcactaaatgaaaacttaaaaaaaaaaattaaaatgaatttgtgtctaggtaacttataggaataacctttt 24653571  T
Q  423 ttttatagaataaattacaacatatcatatttgtttgtatatttaaacaatttaatgttaatggtcacgatatatgatgtcca 505  Q
    |||| |  |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  24653572 ttttttgtaataaattgcatcatatcatatttgtttgtatatttaaacaatttaatgttaatggtcacaatgtatgatgtcca 24653654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 29418655 - 29418563
Alignment:
Q  286 ttaaactctcggcagatattgtctctaataagattagctctcactaatatttat---ttttgaaataattagctatcactaaatgaaacttat 375  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||||||||   |||| ||| ||| | |||||||||||||||||||||    
T  29418655 ttaaactctcggcagatagtgtcttcaataagattagctctcactaatatttatttatttttaaaaaatcatctatcactaaatgaaacttat 29418563  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 18175239 - 18175287
Alignment:
Q  34 tattatacgtaggggtcggggttcgaatctcagacatcctacttattca 82  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||    
T  18175239 tattatatgtaggggtcggggttcgaaccccagacatcccacttattca 18175287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 27278819 - 27278768
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||||| ||||||||||||||||||| |||||||| || | ||||||||    
T  27278819 attattatatgtaggggtcggggttcgaacctcagacaccccatttattcac 27278768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 33729808 - 33729859
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||||| | ||||| |||||||||||||||||||| || ||||||||||    
T  33729808 attattatatgcaggggccggggttcgaatctcagacaccccacttattcac 33729859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 49019213 - 49019264
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||||| |||||||||||||||||||||||||||| |  ||||||||||    
T  49019213 attattatatgtaggggtcggggttcgaatctcagacaccgcacttattcac 49019264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 43566861 - 43566810
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||||| | ||||||||||||||||| |||||||| || ||||||||||    
T  43566861 attattatatgcaggggtcggggttcgaacctcagacaccccacttattcac 43566810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 4478433 - 4478383
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattca 82  Q
    ||||||||| | ||||||||||||||||||| | ||||||| |||||||||    
T  4478433 attattatatgcaggggtcggggttcgaatcccggacatcccacttattca 4478383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 20221466 - 20221515
Alignment:
Q  34 tattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||| ||||||||||| ||||||| ||| ||||||| ||||||||||    
T  20221466 tattatatgtaggggtcggtgttcgaacctcggacatcccacttattcac 20221515  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 11872903 - 11872954
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||||| ||||||||||| ||||||| | | ||||||||||||||||||    
T  11872903 attattatatgtaggggtcggagttcgaaccccggacatcctacttattcac 11872954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 22158277 - 22158328
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||||| | ||||||||||||||||| ||| ||||||| ||||||||||    
T  22158277 attattatatgcaggggtcggggttcgaaactcggacatccaacttattcac 22158328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 25259493 - 25259526
Alignment:
Q  47 ggtcggggttcgaatctcagacatcctacttatt 80  Q
    |||||||||||||||||||||| |||||||||||    
T  25259493 ggtcggggttcgaatctcagacttcctacttatt 25259526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 47416497 - 47416549
Alignment:
Q  31 gattattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    |||||||||| | |||||| |||||||||||||| |||| || ||||||||||    
T  47416497 gattattatatgcaggggttggggttcgaatctcggacaccccacttattcac 47416549  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 3569078 - 3569125
Alignment:
Q  36 ttatacgtaggggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||| ||||||||| |||||||||| |||||||||||| ||||||||    
T  3569078 ttatatgtaggggtcagggttcgaatttcagacatcctatttattcac 3569125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 51718166 - 51718209
Alignment:
Q  34 tattatacgtaggggtcggggttcgaatctcagacatcctactt 77  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||    
T  51718166 tattatatgtaggggttggggttcgaatctcagacatcccactt 51718209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 49916470 - 49916520
Alignment:
Q  32 attattatacgtaggggtcggggttcgaatctcagacatcctacttattca 82  Q
    ||||||||| ||||||||||||||||||||| | ||||||| | |||||||    
T  49916470 attattatatgtaggggtcggggttcgaatcccggacatcccatttattca 49916520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 44746284 - 44746324
Alignment:
Q  42 gtaggggtcggggttcgaatctcagacatcctacttattca 82  Q
    ||||||||||| ||||||| |||||| ||||||||||||||    
T  44746284 gtaggggtcggtgttcgaacctcagatatcctacttattca 44746324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 21461703 - 21461666
Alignment:
Q  46 gggtcggggttcgaatctcagacatcctacttattcac 83  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  21461703 gggtcggggttcgaatctcggacatcccacttattcac 21461666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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