View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0438_2D_low_11 (Length: 503)
Name: NF0438_2D_low_11
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 50 - 496
Target Start/End: Complemental strand, 35929119 - 35928673
Alignment:
| Q |
50 |
ctgttggtcctcaaggccaagcttcttgtggccgttgcttgagggtatgcttggacattcttgaactgtttgttttcacattatttattaagtattttcc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929119 |
ctgttggtcctcaaggccaagcttcttgtggccgttgcttgagggtatgcttggacattcttgaactgtttgttttcacattatttattaagtattttcc |
35929020 |
T |
|
| Q |
150 |
atctaaaagtatttaagtcatctattttaaaatttatatattggacggttctttttcgataaaataaagtttacacgagtcggtaaaagcttacatttaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35929019 |
atctaaaagtatttaagtcatctattttaaaatttatatattggacggttctttttcgataaaataaagtttacacgagtcggtaaaagcttacatttaa |
35928920 |
T |
|
| Q |
250 |
gcttacgaagtactaacataactacttacatatttatcaatcaatgagatcctcacatgatcataatttgaactctagtcctttgtgggatttgagttga |
349 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928919 |
gcttacaaagtactgacataactacttccatatttatcaatcaatgagatcctcacatgatcataatttgaactctagtcctttgtgggatttgagttga |
35928820 |
T |
|
| Q |
350 |
aaccttaccatattattggatgattgtgtaaaatattttacactaataacgaaccgaaaataagcaagtaaaactctactacatatacatatagtgcgca |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928819 |
aaccttaccatattattggatgattgtgtaaaatattttacactaataacgaaccgaaaataagcaagtaaaactctactacatatacatatagtgcgca |
35928720 |
T |
|
| Q |
450 |
tacatgctttatgtgttctatttttccttcattttatttctatactc |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35928719 |
tacatgctttatgtgttctatttttccttcattttatttctatactc |
35928673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4 times since January 2019
Visitors: 3264