View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_2D_low_12 (Length: 498)
Name: NF0438_2D_low_12
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 242 - 498
Target Start/End: Original strand, 35928436 - 35928690
Alignment:
| Q |
242 |
atatatatatttagtcaccacaatcgacaaaagcatagttgacaataagatgtccctgagcattcccacttctatctgagtcgagcctttggaacacacc |
341 |
Q |
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| T |
35928436 |
atatatatatttagtcaccacaatcgacaaaagcatagttgacaataagatgtccctgagcattcccacttctatctgagtcgagcctttggaacacacc |
35928535 |
T |
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| Q |
342 |
aacgtccaagtctaagcccccattatggcattgatcaataattcttgctatttgctgatctccagttttagtgtttgtcacctatcatcaacaaacatga |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928536 |
aacgtccaagtctaagcccccattatggcattgatcaataattcttgctatttgctgatctccagttttagtgtttgtcacctatcatcaacaaacatga |
35928635 |
T |
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| Q |
442 |
aagctaatcatttatactttggatcaagaagaatcacaagagtatagaaataaaatg |
498 |
Q |
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| T |
35928636 |
aagctaatcatttatactttggatcaagaagaatcac--gagtatagaaataaaatg |
35928690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 35928181 - 35928399
Alignment:
| Q |
32 |
atgagatggacatcatacgcaagatatgataagaggttatcctatcttgatgtcttatttaattttaatccaactcttttattctatctatctcttagaa |
131 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928181 |
atgagatgaacatcatacgcaagatatgataagagcttatcctatcttgatgtgttatttaattttaatccaactcttttattctatctatctcttagaa |
35928280 |
T |
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| Q |
132 |
tcatgaagtgagtaaagaaaacttgtccaactttattacgaaaaagtagagcactatatcatgcatgctatatagccacatgatcacattatgtgaagag |
231 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35928281 |
tcatgaagtgagtaaag-aaacttgtccaactttattacgaaaaagtagagcactatatcatgcatgctatatagccacatgatcacattatgtgaagag |
35928379 |
T |
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| Q |
232 |
ggcagttacaatatatatat |
251 |
Q |
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|||||||||||||||||||| |
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| T |
35928380 |
ggcagttacaatatatatat |
35928399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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