View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_2D_low_13 (Length: 436)

Name: NF0438_2D_low_13
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_2D_low_13
NF0438_2D_low_13
[»] chr1 (4 HSPs)
chr1 (1-436)||(15287725-15288156)
chr1 (60-269)||(46899509-46899718)
chr1 (128-205)||(34097955-34098032)
chr1 (130-184)||(31418501-31418555)
[»] chr4 (1 HSPs)
chr4 (174-271)||(50751336-50751433)
[»] chr3 (1 HSPs)
chr3 (174-271)||(4323084-4323181)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 15287725 - 15288156
Alignment:
Q  1 aaatcagctccaattcaccagactcattatccacctccgatgaaactgtttccaccgccaccgcatccgagacttgctttgacctagctgccgacggaga 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  15287725 aaatcagctccaattcaccagactcattatccaccaccgatgaaactgtttccaccgccgccgcatcggagacttgctttgacctagctgccgacggaga 15287824  T
Q  101 gatccacttcgctaacatgtaatcacgcttcctccacggcggaacatgcattcctttcttcttcaaactctgcttcgccgcctccgacacgacggtgacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15287825 gatccacttcgctaacatgtaatcacgcttcctccacggcggaacatgcattcctttcttcttcaaactctgcttcgccgcctccgacacgacggtgacg 15287924  T
Q  201 atctgcttcaaccggtcctttttgccgacgaaaatatacggaagcgattgaagaatcgtcttatactgacttgtagatctcgcgatttcaaattccgatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15287925 atctgcttcaaccggtcctttttgccgacgaaaatatacggaagcgattgaagaatcgtcttatactgacttgtagatctcgcgatttcaaattccgatc 15288024  T
Q  301 gaaaatcgatatcaataatcaacgtttcaccttccacaatcgcatcaatgaattgataatcacctgaccnnnnnnnnnnnnnnnncgattcagaaaacga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |                  |||||||||||||||    
T  15288025 gaaaatcgatatcaataatcaacgtttcaccttccacaatcgcatcaatgaattgataatcacctaa----aacaaaacaaaaaacgattcagaaaacga 15288120  T
Q  401 gttgagttaactcaattttgaattttgaatctaatt 436  Q
    ||||||||||||||||||||||||||||||||||||    
T  15288121 gttgagttaactcaattttgaattttgaatctaatt 15288156  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 60 - 269
Target Start/End: Original strand, 46899509 - 46899718
Alignment:
Q  60 accgcatccgagacttgctttgacctagctgccgacggagagatccacttcgctaacatgtaatcacgcttcctccacggcggaacatgcattcctttct 159  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||| |||||||||||    
T  46899509 accgcatcggagacttgctttgacctagctgccgacggagagatccacttagcaagcatgtaatcacgcttcctccacggcggaacattcattcctttct 46899608  T
Q  160 tcttcaaactctgcttcgccgcctccgacacgacggtgacgatctgcttcaaccggtcctttttgccgacgaaaatatacggaagcgattgaagaatcgt 259  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  46899609 tcttcaaactctgcttcgtcgcctcagacacgatggtgacgatctactttaaccggtccttttggccgacgaaaatatacggaagcgattgaagaattgt 46899708  T
Q  260 cttatactga 269  Q
    ||||||||||    
T  46899709 cttatactga 46899718  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 34097955 - 34098032
Alignment:
Q  128 cttcctccacggcggaacatgcattcctttcttcttcaaactctgcttcgccgcctccgacacgacggtgacgatctg 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  34097955 cttcctccacggcggaacaggcattcctttcttcttcaaactctgcttcgccgcctccgatacgacggcgacgatctg 34098032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 31418501 - 31418555
Alignment:
Q  130 tcctccacggcggaacatgcattcctttcttcttcaaactctgcttcgccgcctc 184  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  31418501 tcctccacggcggaactggcattcccttcttcttcaaactctgcttcgccgcctc 31418555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 174 - 271
Target Start/End: Original strand, 50751336 - 50751433
Alignment:
Q  174 ttcgccgcctccgacacgacggtgacgatctgcttcaaccggtcctttttgccgacgaaaatatacggaagcgattgaagaatcgtcttatactgact 271  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  50751336 ttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacgaaaatatacggaagcgattgaagaattgtcttatactgact 50751433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 4323181 - 4323084
Alignment:
Q  174 ttcgccgcctccgacacgacggtgacgatctgcttcaaccggtcctttttgccgacgaaaatatacggaagcgattgaagaatcgtcttatactgact 271  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  4323181 ttcgccgcctccgacacgacggtgccgatctgcttcaaccggtcctttttgcagacgaaaatatacggaagcgattgaagaattgtcttatactgact 4323084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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