View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_2D_low_18 (Length: 361)
Name: NF0438_2D_low_18
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 55895631 - 55895295
Alignment:
| Q |
8 |
tttgtttggtatctacgtgacaccaatactttaaatctgagatgttt-caacatccaacacgtgttagtgtagtccgaccaaacactaacacaacactta |
106 |
Q |
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| T |
55895631 |
tttgtttggtatctacgtgacaccaatactttaaatttgaggtgttttcaacatcaaacacgtgttagtgtagtccgaccaa-cactaacacaacactta |
55895533 |
T |
|
| Q |
107 |
catatctggcttcagatttttagtactttataattagggatgattcttgtttgattggtatttgaatttaaattattgtaattcttaattttcagacaca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55895532 |
catatctggcttcagatttttagtactttataattagggatgattcttgtttgattgatatttgaatttaaattattgtaattcttaattttcagacaca |
55895433 |
T |
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| Q |
207 |
tggagtactaaatgctattagttggggaatcttgatgccaacgggagcagtaatagcaaggtatttgaaggtgttcaaatctgcagaccctgcttggttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55895432 |
tggagtactaaatgctattagttggggaatcttgatgccaacgggagcagtaatagcaaggtatttgaaggtgttcaaatctgcagaccctgcttggttc |
55895333 |
T |
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| Q |
307 |
tatcttcacataacttgtcaagtatctgcctacatagt |
344 |
Q |
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| T |
55895332 |
tatcttcacataacttgtcaagtctctgcctacatagt |
55895295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 148 - 344
Target Start/End: Original strand, 1029435 - 1029631
Alignment:
| Q |
148 |
gattcttgtttgattggtatttgaatttaaattattgtaattcttaattttcagacacatggagtactaaatgctattagttggggaatcttgatgccaa |
247 |
Q |
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| T |
1029435 |
gattcttgtttgattggtctttgaatttaaattattgtaattcttaattttcagacacatggagtactaaatgctattagttggggaatcttgatgccaa |
1029534 |
T |
|
| Q |
248 |
cgggagcagtaatagcaaggtatttgaaggtgttcaaatctgcagaccctgcttggttctatcttcacataacttgtcaagtatctgcctacatagt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1029535 |
cgggagcagtaatagcaaggtatttgaaggtgttcaaatctgcagaccctgcttggttctatcttcacataacttgtcaagtctctgcctacatagt |
1029631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 1029323 - 1029438
Alignment:
| Q |
9 |
ttgtttggtatctacgtgacaccaatactttaaatctgagatg-tttcaacatccaacacgtgttagtgtagtccgaccaaacactaacacaacacttac |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1029323 |
ttgtttggtatctacgtgacaccaatactttaaatttgaggtgttttcaacatccaacacgtgttagtgtagtccgacc-aacactaacacaacacttac |
1029421 |
T |
|
| Q |
108 |
atatctggcttcagatt |
124 |
Q |
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||||||||||||||||| |
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| T |
1029422 |
atatctggcttcagatt |
1029438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 9412915 - 9412796
Alignment:
| Q |
195 |
ttttcagacacatggagtactaaatgctattagttggggaatcttgatgccaacgggagcagtaatagcaaggtatttgaaggtgttcaaatctgcagac |
294 |
Q |
| |
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||||||||| |||||||| |||||||| || || ||||||||||||||||| |||||| || || |||||||| |||||||| ||||| ||||||||| |
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| T |
9412915 |
ttttcagactcatggagtgctaaatgcaataagctggggaatcttgatgcccttgggagctgtgattgcaaggtacttgaaggttttcaagtctgcagac |
9412816 |
T |
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| Q |
295 |
cctgcttggttctatcttca |
314 |
Q |
| |
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||||||||||| || ||||| |
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| T |
9412815 |
cctgcttggttttaccttca |
9412796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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