View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0438_2D_low_2 (Length: 1797)
Name: NF0438_2D_low_2
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_2 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] chr7 (13 HSPs) |
| |
|
| [»] scaffold0479 (2 HSPs) |
| |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] scaffold0003 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 862; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 865 - 1797
Target Start/End: Complemental strand, 33811868 - 33810939
Alignment:
| Q |
865 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
964 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33811868 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa |
33811771 |
T |
|
| Q |
965 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
1064 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811770 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
33811671 |
T |
|
| Q |
1065 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
1164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811670 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
33811571 |
T |
|
| Q |
1165 |
ctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttctta |
1264 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811570 |
ctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttctta |
33811472 |
T |
|
| Q |
1265 |
ttttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttatcaatttgttactgacatggtagaatttttacccccgcaagctatt |
1364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33811471 |
ttttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctatt |
33811372 |
T |
|
| Q |
1365 |
attcataggcatgctagtggagaaaaattcaacattttcaattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaa |
1464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811371 |
attcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaa |
33811272 |
T |
|
| Q |
1465 |
gggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagaacttttgtcatcatatctg |
1564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33811271 |
gggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctg |
33811172 |
T |
|
| Q |
1565 |
ctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttga |
1664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811171 |
ctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttga |
33811072 |
T |
|
| Q |
1665 |
atggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttc |
1764 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
33811071 |
atggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttc |
33810972 |
T |
|
| Q |
1765 |
atccacatcatctccttacaaccttcagtgatt |
1797 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
33810971 |
atccacatcatctccttacagccttcagtgatt |
33810939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 865 - 1797
Target Start/End: Complemental strand, 33816786 - 33815857
Alignment:
| Q |
865 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
964 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33816786 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa |
33816689 |
T |
|
| Q |
965 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
1064 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816688 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
33816589 |
T |
|
| Q |
1065 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
1164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816588 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
33816489 |
T |
|
| Q |
1165 |
ctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttctta |
1264 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816488 |
ctatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttctta |
33816390 |
T |
|
| Q |
1265 |
ttttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttatcaatttgttactgacatggtagaatttttacccccgcaagctatt |
1364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33816389 |
ttttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctatt |
33816290 |
T |
|
| Q |
1365 |
attcataggcatgctagtggagaaaaattcaacattttcaattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaa |
1464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816289 |
attcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaa |
33816190 |
T |
|
| Q |
1465 |
gggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagaacttttgtcatcatatctg |
1564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33816189 |
gggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctg |
33816090 |
T |
|
| Q |
1565 |
ctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttga |
1664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816089 |
ctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttga |
33815990 |
T |
|
| Q |
1665 |
atggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttc |
1764 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
33815989 |
atggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgattctggcctaactcttgcaggaacttcttc |
33815890 |
T |
|
| Q |
1765 |
atccacatcatctccttacaaccttcagtgatt |
1797 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
33815889 |
atccacatcatctccttacagccttcagtgatt |
33815857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 865 - 1444
Target Start/End: Complemental strand, 33808214 - 33807638
Alignment:
| Q |
865 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa |
964 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33808214 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa |
33808117 |
T |
|
| Q |
965 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
1064 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808116 |
accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
33808017 |
T |
|
| Q |
1065 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
1164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808016 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
33807917 |
T |
|
| Q |
1165 |
ctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttctta |
1264 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807916 |
ctatgtgagtgaggattgtgttgtggtgt-gtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttctta |
33807818 |
T |
|
| Q |
1265 |
ttttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttatcaatttgttactgacatggtagaatttttacccccgcaagctatt |
1364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33807817 |
ttttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctatt |
33807718 |
T |
|
| Q |
1365 |
attcataggcatgctagtggagaaaaattcaacattttcaattgatgcattattgttactattgtggctggaaaccaaca |
1444 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807717 |
attcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 949 - 1044
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
1044 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || ||||||| | ||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 949 - 1044
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
1044 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
22763905 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa |
22764002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 198 - 866
Target Start/End: Complemental strand, 5332447 - 5331781
Alignment:
| Q |
198 |
tttcatttaataatatgcttaagaaacgcacataattttttaatcatgtttgtgttatatattattccgtccacacatgaatacatgatacacatgcata |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
5332447 |
tttcatttaataatatgcttaagaaacgcacataattttttaatcatgtttgtgttatatattattccttccatacatgaatacatgatacacatacata |
5332348 |
T |
|
| Q |
298 |
actaatgagatatatacttcaattagttaatttgagaaacctagtgatgggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgac |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5332347 |
actaatgagatatatacttcaattagttaatttgagaaacctagt--tgggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgac |
5332250 |
T |
|
| Q |
398 |
tggaaagggtttgtgaattttttcgatcacaataaaacgctattgaatagacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtg |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5332249 |
tggaaagggtttgtgaattttttcgatcacaataaaacgctattgaatagacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtg |
5332150 |
T |
|
| Q |
498 |
gtagcccagatatgtataacaaaatgctatcaatggtgggtccatcaatgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatga |
597 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5332149 |
gtagcccagacatgtataacaaaatgctatcaatggtggatccatcaatgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatga |
5332050 |
T |
|
| Q |
598 |
agtggcattcacaggagaggttgaaatgacaaagagtacattgatgaaagacatggaagcacaggcacagtcagagtttccattgcagcagccattacta |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5332049 |
agtggcattcacaggagaggttgaaatgacaaagagtacattgatgaaagacatggaagcacaggcacagtcagagtttccattgcagcagccattacta |
5331950 |
T |
|
| Q |
698 |
gaagtgagaaacaaacttggagaaaccccggtttatagggcagctgctcttggaaagacaaatttgatcaagtgttttcttgacgaattgagcgtggatt |
797 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5331949 |
gaagtgagaaacaaacttggagaaaccccggtttataggacagctgctcttggaaagacaaatttgattaagtgttttcttgacgaattgagcgtggatt |
5331850 |
T |
|
| Q |
798 |
taagggttcattttcatagaactgttgataaaatgtctattcttgacattgctgtcattggccaattct |
866 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5331849 |
taagggttcattttcatagaactgttgataaaatgtctattcttgacattgctgtcattggccaattct |
5331781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 8e-99
Query Start/End: Original strand, 347 - 866
Target Start/End: Original strand, 5314368 - 5314881
Alignment:
| Q |
347 |
ggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgactggaaagggtttgtgaattttttcgatcacaataaaacgctattgaata |
446 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||| |||| | |||||||| ||| | | |||||| | | | ||| |||||| ||| |
|
|
| T |
5314368 |
ggttcaattgaaaaaatgaaagaaccatatatattagcaaagagatataattggaaaggatttttagaatttttccttaaacacaaagatctattggata |
5314467 |
T |
|
| Q |
447 |
gacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtggtagcccagatatgtataacaaaatgctatcaatggtgggtccatca-- |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||| ||||||| |
|
|
| T |
5314468 |
aacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtggtagcccagaaatgtacaacaaaatgctattaaaggtggatccatcaaa |
5314567 |
T |
|
| Q |
545 |
-atgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatgaagtggcattcacaggagaggttgaaatgacaaagagtacattgatg |
643 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| ||||| | |
|
|
| T |
5314568 |
catgcaacatgtgttgaggatgcaagatgacatgggaaacacaccacttcatgaagtggctttcacaggtgaagttgaaatgacaaagagtatattgaag |
5314667 |
T |
|
| Q |
644 |
aaagacatggaagcacaggcacagtcagagtttccattgcagcagccattactagaagtgagaaacaaacttggagaaaccccggtttatagggcagctg |
743 |
Q |
| |
|
||||| |||| || | || || ||||||| | |||||| || | |||||||||||||||||||||| || || |||||||| |||| |
|
|
| T |
5314668 |
aaagaagaggaaacaatgtcagag---cagtttcc------gaggccattgttacagttgagaaacaaacttggagaaactccagtgtatagggctgctg |
5314758 |
T |
|
| Q |
744 |
ctcttggaaagacaaatttgatcaagtgttttcttgacgaattgagcgtggatttaagggttcattttcatagaactgttgataaaatgtctattcttga |
843 |
Q |
| |
|
||||||| ||||||| |||| | || || ||| |||| || ||| | ||||||||||||| |||||||||||| |||| |||||| ||||| |||||| | |
|
|
| T |
5314759 |
ctcttgggaagacaagtttggttaaatgctttgttgaagagttgggtgtggatttaagggatcattttcataggactggtgataagatgtccattcttca |
5314858 |
T |
|
| Q |
844 |
cattgctgtcattggccaattct |
866 |
Q |
| |
|
|| ||||||||||| ||||||| |
|
|
| T |
5314859 |
cactgctgtcattgatcaattct |
5314881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 5332560 - 5332486
Alignment:
| Q |
20 |
aattattctagtataccttgtgaactatattaatcaattaagcaaggcacatgaaaggggttggagaattaattg |
94 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5332560 |
aattattctagtctaccttgtgaactatattaatcaattaagcaaggcacatgaaaagggttggagaattaattg |
5332486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 951 - 1044
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
951 |
ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
1044 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 884 - 918
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
| Q |
884 |
taatttccctcctccgtgaactcaaaataggcact |
918 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37038108 |
taatttctctcctccgtgaactcaaaataggcact |
37038074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 866 - 1261
Target Start/End: Complemental strand, 50603403 - 50603003
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
965 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa |
50603304 |
T |
|
| Q |
966 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
1065 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
50603303 |
ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc |
50603204 |
T |
|
| Q |
1066 |
taactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaac |
1163 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50603203 |
taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctct--cactcttatgaggaactttctatttttctctcaac |
50603106 |
T |
|
| Q |
1164 |
tctatgtgagtgaggattg-----tgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttgg |
1258 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
50603105 |
tctgtgtgagtgaggattgtgctatgttgtggtgtgtttgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgcttgg |
50603006 |
T |
|
| Q |
1259 |
ttc |
1261 |
Q |
| |
|
||| |
|
|
| T |
50603005 |
ttc |
50603003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1480 - 1797
Target Start/End: Original strand, 54967873 - 54968190
Alignment:
| Q |
1480 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagaacttttgtcatcatatctgctccgttgtcattgg |
1579 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
1580 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
1679 |
Q |
| |
|
|||||| |||||||| || || || |||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || || |
|
|
| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
1680 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctcc |
1779 |
Q |
| |
|
|||||| || |||||||| || ||||| || |||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||| |||||| |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttgactttggcctaactcttgcaggaacttcttcatccacaggatctcc |
54968172 |
T |
|
| Q |
1780 |
ttacaaccttcagtgatt |
1797 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
54968173 |
ttacaaccttcagtgatt |
54968190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 866 - 1116
Target Start/End: Original strand, 54967210 - 54967477
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
954 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
54967210 |
tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt |
54967306 |
T |
|
| Q |
955 |
agcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttc |
1050 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
54967307 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc |
54967406 |
T |
|
| Q |
1051 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
54967407 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
54967477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 866 - 1063
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
954 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
44782524 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
44782620 |
T |
|
| Q |
955 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
1050 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
44782621 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc |
44782720 |
T |
|
| Q |
1051 |
accctcaggtgga |
1063 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
44782721 |
acccttaggtgga |
44782733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 949 - 1116
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc |
1047 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
1048 |
ttcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
|||||||| ||||||| ||||| ||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat |
39298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 947 - 1063
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
| Q |
947 |
aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
1044 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
| Q |
1045 |
-atcttcaccctcaggtgga |
1063 |
Q |
| |
|
| ||||||||| ||||||| |
|
|
| T |
18556492 |
caacttcacccttaggtgga |
18556511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 8e-19
Query Start/End: Original strand, 1018 - 1122
Target Start/End: Original strand, 31725346 - 31725448
Alignment:
| Q |
1018 |
tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata |
1117 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||| || |||||||||| || |||||||||||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
31725346 |
tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata |
31725443 |
T |
|
| Q |
1118 |
ttttt |
1122 |
Q |
| |
|
||||| |
|
|
| T |
31725444 |
ttttt |
31725448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-18
Query Start/End: Original strand, 878 - 1063
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
| Q |
878 |
cctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac |
966 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| |||| |||||| || | ||||||||| |||||||| |
|
|
| T |
54979854 |
cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac |
54979950 |
T |
|
| Q |
967 |
cttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg |
1062 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| | ||||||||| |||||| |
|
|
| T |
54979951 |
cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg |
54980050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 945 - 1044
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
| Q |
945 |
acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
1044 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || |||||||||||||| | | ||| ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
17645897 |
acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa |
17645800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 866 - 918
Target Start/End: Complemental strand, 17645981 - 17645928
Alignment:
| Q |
866 |
tgttgggaaatg-cctgcttaatttccctcctccgtgaactcaaaataggcact |
918 |
Q |
| |
|
|||||||||||| ||| | ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
17645981 |
tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacact |
17645928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-134; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-134
Query Start/End: Original strand, 866 - 1239
Target Start/End: Original strand, 31151926 - 31152298
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
965 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa |
31152025 |
T |
|
| Q |
966 |
ccttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac |
1064 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31152026 |
ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac |
31152125 |
T |
|
| Q |
1065 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
1164 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31152126 |
ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactcttacgaggaactctctatttttctctcaact |
31152225 |
T |
|
| Q |
1165 |
ctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaacc |
1239 |
Q |
| |
|
| || || | ||||||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
31152226 |
cccgaggattgtg--ttgtgttgtggtgtgattgctttgctgaagctcttctctatttatagagagatttgaacc |
31152298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 1507 - 1797
Target Start/End: Original strand, 22981829 - 22982119
Alignment:
| Q |
1507 |
gcagcttgtttacaaaactctatcttctcttttggtagaacttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
1606 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
22981829 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
22981928 |
T |
|
| Q |
1607 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
1706 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
22981929 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
22982028 |
T |
|
| Q |
1707 |
atcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgatt |
1797 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22982029 |
gtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgatt |
22982119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 1507 - 1797
Target Start/End: Complemental strand, 23806579 - 23806289
Alignment:
| Q |
1507 |
gcagcttgtttacaaaactctatcttctcttttggtagaacttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
1606 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
23806579 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
23806480 |
T |
|
| Q |
1607 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
1706 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
|
|
| T |
23806479 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
23806380 |
T |
|
| Q |
1707 |
atcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgatt |
1797 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23806379 |
gtcgcaatagagaacatagcttttttgattctggcctaactcttgcaggaacttcttcatccacatgatctccttacaaccttcagtgatt |
23806289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 866 - 1063
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
956 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
22981614 |
T |
|
| Q |
957 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
1053 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
22981613 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
22981514 |
T |
|
| Q |
1054 |
ctcaggtgga |
1063 |
Q |
| |
|
|| ||||||| |
|
|
| T |
22981513 |
cttaggtgga |
22981504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 866 - 1063
Target Start/End: Original strand, 23806698 - 23806904
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag |
956 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||| | ||||| | |||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag |
23806794 |
T |
|
| Q |
957 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
1053 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||||||| |
|
|
| T |
23806795 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc |
23806894 |
T |
|
| Q |
1054 |
ctcaggtgga |
1063 |
Q |
| |
|
|| ||||||| |
|
|
| T |
23806895 |
cttaggtgga |
23806904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 942 - 1125
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
| Q |
942 |
acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat |
1040 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | | |||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
1041 |
acaaatcttcaccctcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc |
1125 |
Q |
| |
|
||||| |||||||| | || ||||||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc |
1111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1584 - 1673
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
1584 |
aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
1673 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | || ||||||| || |||| |||||||||||| ||| |||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1442 - 1797
Target Start/End: Original strand, 4836172 - 4836524
Alignment:
| Q |
1442 |
acaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttgg |
1541 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||| ||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||| || |
|
|
| T |
4836172 |
acaattctccccctccagccataggggaatg--cctta-attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcgg |
4836268 |
T |
|
| Q |
1542 |
tagaacttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctc |
1641 |
Q |
| |
|
||| |||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4836269 |
tagcggttttgtcatcatgtctgctccattctcatttgtgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctc |
4836368 |
T |
|
| Q |
1642 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggc |
1741 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836369 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggc |
4836468 |
T |
|
| Q |
1742 |
ctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgatt |
1797 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
4836469 |
ataactcttgtagaaacttcttcatccataggatctccttacaaccttcagtgatt |
4836524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-45
Query Start/End: Original strand, 1480 - 1658
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
1480 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagaacttttgtcatcatatctgctccgttgtcattgg |
1579 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||| |||||||||||| || ||||| || | ||||| |
|
|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
1580 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttga |
1658 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-33
Query Start/End: Original strand, 865 - 1063
Target Start/End: Original strand, 4842647 - 4842857
Alignment:
| Q |
865 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt |
953 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | ||||| |
|
|
| T |
4842647 |
ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaattt |
4842743 |
T |
|
| Q |
954 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt |
1049 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||| ||||||||| | ||| |
|
|
| T |
4842744 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaactt |
4842843 |
T |
|
| Q |
1050 |
caccctcaggtgga |
1063 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
4842844 |
cacccttaggtgga |
4842857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 9e-31
Query Start/End: Original strand, 866 - 1116
Target Start/End: Original strand, 25857131 - 25857395
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
954 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| | |||||| |
|
|
| T |
25857131 |
tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt |
25857225 |
T |
|
| Q |
955 |
agcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttca |
1051 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
25857226 |
agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttca |
25857325 |
T |
|
| Q |
1052 |
ccctcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
|| | ||||||| || ||| || |||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
25857326 |
cctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat |
25857395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 866 - 1116
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc |
957 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||||| |||| | || ||| | | ||||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc |
4835672 |
T |
|
| Q |
958 |
gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
1053 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
1054 |
ctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
|| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4835773 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
4835840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 8e-25
Query Start/End: Original strand, 947 - 1063
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
| Q |
947 |
aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
1044 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
| Q |
1045 |
-atcttcaccctcaggtgga |
1063 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
13465146 |
caagttcaccctcaggtgga |
13465165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 957 - 1126
Target Start/End: Original strand, 8252686 - 8252853
Alignment:
| Q |
957 |
cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctc |
1056 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| |||||| ||||||| || || | ||||||||| ||||||||||| ||||| | | |
|
|
| T |
8252686 |
cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt |
8252779 |
T |
|
| Q |
1057 |
aggtggacctaacta----tgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct |
1126 |
Q |
| |
|
|| ||||| ||| || ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8252780 |
agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct |
8252853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 949 - 1044
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
1044 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 940 - 1061
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
| Q |
940 |
acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa |
1039 |
Q |
| |
|
|||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
1040 |
tacaa-atcttcaccctcaggtg |
1061 |
Q |
| |
|
||||| | ||||||||| ||||| |
|
|
| T |
17845869 |
tacaacaacttcacccttaggtg |
17845847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 949 - 1063
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a |
1045 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||| | | |||||||||| | ||||||||||| ||||| ||||||||| | |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca |
24379469 |
T |
|
| Q |
1046 |
tcttcaccctcaggtgga |
1063 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
24379470 |
acttcacccttaggtgga |
24379487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 866 - 916
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggca |
916 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 949 - 1015
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa |
1015 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38994151 |
aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa |
38994218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 861 - 936
Target Start/End: Original strand, 24379274 - 24379347
Alignment:
| Q |
861 |
aattctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat |
936 |
Q |
| |
|
|||| |||||| ||||| || | ||||||| |||||||||||||| ||||||||||| ||| ||||||||||||| |
|
|
| T |
24379274 |
aattgtgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat |
24379347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 166; Significance: 5e-88; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 166; E-Value: 5e-88
Query Start/End: Original strand, 1480 - 1797
Target Start/End: Complemental strand, 2274 - 1957
Alignment:
| Q |
1480 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagaacttttgtcatcatatctgctccgttgtcattgg |
1579 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||||||| ||| |||||||| |||||||| || ||||||| |
|
|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
1580 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
1679 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||| || || |
|
|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
1680 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattctggcctaactcttgtaggaatttcttcatccacatcatctcc |
1779 |
Q |
| |
|
|||||| || ||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| | |||||| |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgattttggcctaactcttgtaggaacttcttcatccataggatctcc |
1975 |
T |
|
| Q |
1780 |
ttacaaccttcagtgatt |
1797 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1974 |
ttacaaccttcagtgatt |
1957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 866 - 1063
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
954 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
2936 |
tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
2840 |
T |
|
| Q |
955 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
1050 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
2839 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
2740 |
T |
|
| Q |
1051 |
accctcaggtgga |
1063 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2739 |
acccttaggtgga |
2727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-60
Query Start/End: Original strand, 866 - 1081
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
965 |
Q |
| |
|
|||||| |||||||| | ||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
29706854 |
tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa |
29706953 |
T |
|
| Q |
966 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
1065 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| | || |||||||||||||||||||||||||||||| | | |||||||||||||| |||||||| |
|
|
| T |
29706954 |
ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc |
29707053 |
T |
|
| Q |
1066 |
taactatgtatctcaa |
1081 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29707054 |
taactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 949 - 1041
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata |
1041 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||| ||||| |||||| || | |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 84; Significance: 4e-39; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 4e-39
Query Start/End: Original strand, 884 - 1116
Target Start/End: Original strand, 26516 - 26752
Alignment:
| Q |
884 |
taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa |
983 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
26516 |
taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa |
26613 |
T |
|
| Q |
984 |
ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaat-cttcaccctcaggtggacctaacta-----tgtatc |
1077 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| |||||| |||| |||| | |||||||| | || |||||| ||||||| || |||| | | || |
|
|
| T |
26614 |
ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaactactccacccttaggtggatctcactacaatttatctc |
26713 |
T |
|
| Q |
1078 |
tcaatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |
|
|
| T |
26714 |
tcaatttgtaaggaacactctcacaaattggctcactat |
26752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 6e-35; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-35
Query Start/End: Original strand, 1439 - 1797
Target Start/End: Original strand, 25003452 - 25003789
Alignment:
| Q |
1439 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttt |
1538 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| | | |||||||||||||||||| || | || || |||||||| || | || || |
|
|
| T |
25003452 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctgtatagctttcatattctttacaaaccttt------tcatt |
25003545 |
T |
|
| Q |
1539 |
tggtagaacttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatac |
1638 |
Q |
| |
|
||||||| |||||||||||||| || || ||||||| ||||| |||||||| ||||||| ||| | ||||| |||||||||| || ||| |
|
|
| T |
25003546 |
tggtagagtttttgtcatcatatttgtccctttgtcatcggtgt---ttttctctttttgcagtagtct-ttctctaacacatcac-------at--tac |
25003632 |
T |
|
| Q |
1639 |
ctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgattct |
1738 |
Q |
| |
|
|||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
25003633 |
ctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgattca |
25003730 |
T |
|
| Q |
1739 |
ggcctaactcttgtaggaatttcttcatccacatcatctccttacaaccttcagtgatt |
1797 |
Q |
| |
|
||||| ||||||| | ||| |||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
25003731 |
ggcctgactcttgcatgaacttcttcatccacgggatctccttacaaccgttagtgatt |
25003789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 9e-31
Query Start/End: Original strand, 865 - 1116
Target Start/End: Original strand, 9757211 - 9757480
Alignment:
| Q |
865 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
953 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
9757211 |
ctgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt |
9757307 |
T |
|
| Q |
954 |
tagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atct |
1048 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||| | || |
|
|
| T |
9757308 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaact |
9757407 |
T |
|
| Q |
1049 |
tcaccctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
||||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9757408 |
tcacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
9757480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 947 - 1044
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
947 |
aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
1044 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 8e-22
Query Start/End: Original strand, 949 - 1061
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
| Q |
949 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-at |
1046 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||| | ||||||||||| ||||||||||||||| | |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa |
42683023 |
T |
|
| Q |
1047 |
cttcaccctcaggtg |
1061 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42683024 |
cttcacccttaggtg |
42683038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1438 - 1468
Target Start/End: Complemental strand, 14178355 - 14178325
Alignment:
| Q |
1438 |
accaacaattctccccctccagccaaaggga |
1468 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178355 |
accaacaattctccccctccagccaaaggga |
14178325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1439 - 1468
Target Start/End: Original strand, 28607519 - 28607548
Alignment:
| Q |
1439 |
ccaacaattctccccctccagccaaaggga |
1468 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607519 |
ccaacaattctccccctccagccaaaggga |
28607548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 9e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 9e-34
Query Start/End: Original strand, 866 - 1116
Target Start/End: Complemental strand, 41481815 - 41481548
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
954 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
41481719 |
T |
|
| Q |
955 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
1050 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
1051 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
41481618 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
41481548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 866 - 1116
Target Start/End: Complemental strand, 36167813 - 36167547
Alignment:
| Q |
866 |
tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
954 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
36167813 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
36167717 |
T |
|
| Q |
955 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
1050 |
Q |
| |
|
||||||||||||||||||||| |||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
36167716 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
36167618 |
T |
|
| Q |
1051 |
accctcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
1116 |
Q |
| |
|
||||| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36167617 |
acccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
36167547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 871 - 1060
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
| Q |
871 |
ggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa |
964 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| | |||| | | ||| ||||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact--agcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa |
18951226 |
T |
|
| Q |
965 |
accttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt |
1060 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| | || ||||||| | ||||||||||| ||||||||||||||| | ||||||||| |||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt |
18951326 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 1439 - 1468
Target Start/End: Complemental strand, 12935084 - 12935055
Alignment:
| Q |
1439 |
ccaacaattctccccctccagccaaaggga |
1468 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935084 |
ccaacaattctccccctccagccaaaggga |
12935055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 45; Significance: 7e-16; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 865 - 1044
Target Start/End: Original strand, 342216 - 342404
Alignment:
| Q |
865 |
ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat---------gacacacaacaaaatttta |
955 |
Q |
| |
|
||||||| |||||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||| |||| |||||| | ||||||| |
|
|
| T |
342216 |
ctgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcac--tagcagaaacgtgaaatataagcgtaatgacacaa-agaatttta |
342312 |
T |
|
| Q |
956 |
gcgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
1044 |
Q |
| |
|
||||| |||||||||||||| |||| || |||| ||||||||||| || | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
342313 |
gcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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