View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0438_2D_low_3 (Length: 1408)
Name: NF0438_2D_low_3
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_3 |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 484 - 1085
Target Start/End: Complemental strand, 6325192 - 6324590
Alignment:
| Q |
484 |
ttaaatgtacttttaaacattctcaattaagaaaatgctttttaaaaatgattgatttgcatggttttctttttactaagctgatataaaaaa-tgttac |
582 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6325192 |
ttaaatgtacttttaaacattctcaattaagaaaatgctttttaaaaatgattgatttgcatggttttctttttactaagctgatataaaaaaatgttac |
6325093 |
T |
|
| Q |
583 |
atgtaacattagagtaaacgattttgagtcagttaatttgattttcctcaaagaccaatattaaaagaatgattctactttaaatactagagctcgaaga |
682 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6325092 |
atgtaacactagagtaaacgattttgagtaagttaatttaattttcctcaaagaccaatattaaaagaatgattctactttaaatactagagctcgaaga |
6324993 |
T |
|
| Q |
683 |
ttatttttcgagtaataacattgaaatttgaaacaagtacgaccagattcacttgaaatttcaaacagtgtaacttttataaaattgtcatgccattgtg |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324992 |
ttatttttcgagtaataacattgaaatttgaaacaagtacgaccagattcacttgaaatttcaaacagtgtaacttttataaaattgtcatgccattgtg |
6324893 |
T |
|
| Q |
783 |
gatcaaagaagtctttctgacaacgactataagttattcggaaattaaaattcaaagtacaagaagaaacttctgaaaatacttcaaagctgataatatt |
882 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
6324892 |
gatcaaagaagtctttctgacaatgactataagttattcggaaattaaaattcaaagtacaagaagaaacttctaaaaatacttcaaagctgatattatt |
6324793 |
T |
|
| Q |
883 |
catgcattgtagaagctatannnnnnnnnnnnnnnnnataaattgtagcatgaaactcatgcaaaagagtttattttcgttgcatgaagacttgcattct |
982 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324792 |
catgcattgtagaagctatatttttattttattttttataaattgtagcatgaaactcatgcaaaagagtttattttcgttgcatgaagacttgcattct |
6324693 |
T |
|
| Q |
983 |
ctcttnnnnnnntgaaaacttgcctattagtaacacaactgccgcaccaatagataaacatcttgacgatgtatctaattcatttcgattataagtgatg |
1082 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324692 |
ctcttaaaaaaatgaaaacttgcctattagtaacacaactgccgcaccaatagataaacatcttgacgatgtatctaattcatttcgattataagtgatg |
6324593 |
T |
|
| Q |
1083 |
cta |
1085 |
Q |
| |
|
||| |
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| T |
6324592 |
cta |
6324590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1155 - 1394
Target Start/End: Complemental strand, 6324520 - 6324283
Alignment:
| Q |
1155 |
gtcacgcatttcttgcgtcacaaacttaagaattcccaggtaattaagtattcccagttcaacccaattccacgcattttcttcttcacttaaaatggga |
1254 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6324520 |
gtcacgcatttcttgcgtcacaaacttaagaattcccaggtaattaagtattcccagttcaacccaattccacgcattttcttcttcacttaaaatgaga |
6324421 |
T |
|
| Q |
1255 |
agtgtttagccatggattccagccttgatttgtattttccagccacatattttcatttcctaccccaagcatttttctcatcaactaatcaagcattttc |
1354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
6324420 |
agtgtttagccatggattccagccttgatttgtattttccagccacatattttcatttcctaccccaagcatttttctcatcaactaa--aagtattttc |
6324323 |
T |
|
| Q |
1355 |
ctccgcatatatactctcatcctcttgtgttgagaataat |
1394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6324322 |
ctccgcatatatactctcatcctcttgtgttgagaataat |
6324283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 5e-75
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 6333047 - 6332888
Alignment:
| Q |
33 |
atgtaaaatgttcatttgagatttgtaatatcctatgatagctattgtaaaataattaatttcatggttttattctagttgaactgattttgatatgtta |
132 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| |
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| T |
6333047 |
atgtaaaatgttcatttgagatttgtaatatcctatgatagctattgtaaaataattaatttcatggcttttttcttgttgaactgattttgatatgtta |
6332948 |
T |
|
| Q |
133 |
atgtggaagtctttttgtttggtacaaagtgtgtgtgtggaagttaataagggcaaaatc |
192 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6332947 |
atgttgaagtctttttgtttggtacaaagtgtgtgtgtggaagttaataagggcaaaatc |
6332888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 4e-63
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 6325565 - 6325423
Alignment:
| Q |
29 |
tatgatgtaaaatgttcatttgagatttgtaatatcctatgata--gctattgtaaaataattaatttcatggttttattctagttgaactgattttgat |
126 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325565 |
tatgatgtaaaatgttcatttgaaatttgtaatatcctataatatagctattgtaaaataattaatttcatggttttattctagttgaactgattttgat |
6325466 |
T |
|
| Q |
127 |
atgttaatgtggaagtctttttgtttggtacaaagtgtgtgtg |
169 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325465 |
atgttaatgtggaagtctttttgtttggtacaaagtgtgtgtg |
6325423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 238 - 358
Target Start/End: Complemental strand, 6325424 - 6325299
Alignment:
| Q |
238 |
tggatattttatttgtcaacatatgataaaagacgaggcacttttgtggtttaatacgtttgaaaccattcaataaaacaagtaaaatgggtat-----g |
332 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6325424 |
tggatattttatttgtcaacatatgataaaagacgaggcacttttgtggtttaatacgtttgaaaccattcaataaaacaagtaaaatgggtatgtgttg |
6325325 |
T |
|
| Q |
333 |
tgtagcttgctttagaacaatttatg |
358 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
6325324 |
tgtagcttgctttagaacaatttatg |
6325299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 27 - 123
Target Start/End: Original strand, 6219966 - 6220064
Alignment:
| Q |
27 |
tatatgatgtaaaatgttcatttgagatttgtaatatcctatgata--gctattgtaaaataattaatttcatggttttattctagttgaactgatttt |
123 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
6219966 |
tatatgatgtaaaatgttcatttgaaatttgtaatatcctataatatagctattgtgaaataattaatttcatggttttgttcttgttgaactgatttt |
6220064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 6345838 - 6345764
Alignment:
| Q |
282 |
tgtggtttaatacgtttgaaaccattcaataaaacaagtaaaa-tgggtatgtgtagcttgctttagaacaattt |
355 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||| |
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| T |
6345838 |
tgtggtttaatacgtttgaaacccttcaataaaccaagtaaaattgggtatgggtagcttgctttagaacaattt |
6345764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 920 - 1054
Target Start/End: Complemental strand, 6332838 - 6332698
Alignment:
| Q |
920 |
ataaattgtagcatgaaactcatgcaaaagagtttattttcgttgcatgaagacttgcattctctctt--nnnnnnntgaaaacttgcctattag-taac |
1016 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| || ||||||||| |||||| |||||||||||||||| ||||||||||| |||||| |||| |
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|
| T |
6332838 |
ataaattgtaccatcaaactcatgcaaaagaattcattttcgtttcatgaaaacttgcattctctcttcaaaaaaaatgaaaacttgcatattagataac |
6332739 |
T |
|
| Q |
1017 |
acaactgccg---caccaatagataaacatcttgacgatgt |
1054 |
Q |
| |
|
|||||||| | ||||||||||||||||||||| |||||| |
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| T |
6332738 |
acaactgctgcaccaccaatagataaacatcttgtcgatgt |
6332698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 6346126 - 6346032
Alignment:
| Q |
33 |
atgtaaaatgttcatttgagatttgtaatatcctatgatagctattgtaaaataattaatttcatggttttattctagttgaactgattttgata |
127 |
Q |
| |
|
||||||||||||| ||||| ||||| |||| |||| |||||||||||||||||||||||| |||| |||| |||| | |||| ||||||||||| |
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| T |
6346126 |
atgtaaaatgttcttttgaaatttgaaataaactataatagctattgtaaaataattaattgcatgcttttcttcttgctgaattgattttgata |
6346032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 6330490 - 6330384
Alignment:
| Q |
251 |
tgtcaacatatgataaaagacgaggcacttttgtgg--tttaatacgtttgaaaccattcaataaaacaagtaaaatgggtatgtgtagcttgctttaga |
348 |
Q |
| |
|
|||||||||||||||||||| || || || |||| |||||||||||| ||||| ||||| |||||||||||||| | |||| ||| |||||||||| |
|
|
| T |
6330490 |
tgtcaacatatgataaaagatgacgcgtttgtgtgtgatttaatacgtttaaaacccttcaacaaaacaagtaaaatcgatatgcataggttgctttaga |
6330391 |
T |
|
| Q |
349 |
acaattt |
355 |
Q |
| |
|
||||||| |
|
|
| T |
6330390 |
acaattt |
6330384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 604 - 683
Target Start/End: Complemental strand, 6330226 - 6330147
Alignment:
| Q |
604 |
ttttgagtcagttaatttgattttcctcaaagaccaatattaaaagaatgattctactttaaatactagagctcgaagat |
683 |
Q |
| |
|
||||||| |||||| || |||||||||||||| ||||||||||||| | || ||||| ||||||||||| |||||||| |
|
|
| T |
6330226 |
ttttgagggagttaagtttattttcctcaaagattaatattaaaagaacggttttacttcaaatactagagatcgaagat |
6330147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 6329151 - 6329109
Alignment:
| Q |
231 |
tagtatttggatattttatttgtcaacatatgataaaagacga |
273 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
6329151 |
tagtatttggatattttacttgtcaacatatgattaaagacga |
6329109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1048 - 1085
Target Start/End: Complemental strand, 6332689 - 6332652
Alignment:
| Q |
1048 |
acgatgtatctaattcatttcgattataagtgatgcta |
1085 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6332689 |
acgatgtatctaattcatttcgattataagtaatgcta |
6332652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 6325230 - 6325198
Alignment:
| Q |
427 |
ctgtaagatataaaatgttcatttgaaattttt |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6325230 |
ctgtaagatataaaatgttcatttgaaattttt |
6325198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 6329300 - 6329231
Alignment:
| Q |
164 |
tgtgtgtggaagttaataagggcaaaatcatcattacttgtctacaacttgttcacttttatatgactag |
233 |
Q |
| |
|
|||||||||||||||||||| |||||||| | || ||| ||| | ||| ||||||||||||||||||| |
|
|
| T |
6329300 |
tgtgtgtggaagttaataagtgcaaaatcctttttccttttctttatcttattcacttttatatgactag |
6329231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 515 - 588
Alignment:
| Q |
282 |
tgtggtttaatacgtttgaaaccattcaataaaacaagtaaaatgggtatgtgtagcttgctttagaacaattt |
355 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||| | || ||| |||||||||||||||||||| |
|
|
| T |
515 |
tgtggtttaatacctttgaaacccatcaataaaacaagtaaaatcgatacgtggagcttgctttagaacaattt |
588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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