View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_2D_low_4 (Length: 928)
Name: NF0438_2D_low_4
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 20 - 504
Target Start/End: Original strand, 44907835 - 44908323
Alignment:
| Q |
20 |
ttcttttatgacagaaagaatagactaaggatgtgaagatgaatgagatgcaattaaatttgattcagtgnnnnnnnggatggatggatggacagtg--- |
116 |
Q |
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| T |
44907835 |
ttcttttatgacagaaagaatagactaaggatgtgaagatgaatgagatgcaattaaatttgattcagtgtttttttggatggatggacagtgagtttga |
44907934 |
T |
|
| Q |
117 |
agtttgaacaaatggcagtgacaccagtgatttaccgaccgatgttgttgaaacttcaaagggtgattctgtaaattttaccgtcaatccaaatgagcaa |
216 |
Q |
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| T |
44907935 |
agtttgaacaaatggcagtgacaccagtgatttaccg----atgttgttgaaacttcaaagggtgattctgtaaattttaccgtcaatccaaatgagcaa |
44908030 |
T |
|
| Q |
217 |
aagttttttatttatatactatgatgaaaaagagatgccactttattattgtatctaagcnnnnnnnnnnnnnnnnncaattatggttcatgatagtaca |
316 |
Q |
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| T |
44908031 |
aagttttttatttatatactatgatgaaaaagagatgccactttattattgtatctaagcttttttatttatcttttcaattatggttcatgatagtaca |
44908130 |
T |
|
| Q |
317 |
aatcaatggaataaaatcaaatt--atnnnnnnnnnnnnnnnggaaatatgaacaaataacaatcccatgtgaggt---gaagaagaagtatgagaccaa |
411 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44908131 |
aatcaatggaataaaatcaaattaaaaaaagaaaagaaaaaaggaaatatgaacaaataacaatcccatgtgaggtgaagaagaagaagtatgagaccaa |
44908230 |
T |
|
| Q |
412 |
atcatcaccagccactcatgttgtctccattctcctttggttaaaggatatgtggttggtcggtcattattcaaacaatacattcaaatttcc |
504 |
Q |
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| T |
44908231 |
atcatcaccagccactcatgttgtctccattctcctttggttaaaggatatgtggttggtcggtcattattcaaacaatgcattcaaatttcc |
44908323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 744 - 868
Target Start/End: Original strand, 44908563 - 44908687
Alignment:
| Q |
744 |
agattttcagagtagacccttcattacgttattttttcaatatacaaatacaatccatgacataccatggttatttattttatcttcacctgagtttgaa |
843 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44908563 |
agattttcagagtagacccttcattacgttattttttcaatatacaaatacaatccatgacataccatggttatttattttatcttcacctgagtttgaa |
44908662 |
T |
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| Q |
844 |
gcaaagaaaaactaaatatatgaat |
868 |
Q |
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| T |
44908663 |
gcaaagaaaaactaaatatatgaat |
44908687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 628 - 686
Target Start/End: Original strand, 44908443 - 44908501
Alignment:
| Q |
628 |
agtatatgtatagttccttcaataattttggaactagaagtttaagctagaagaatcac |
686 |
Q |
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| T |
44908443 |
agtatatgtatagttccttcaataattttggaactagaagtttaagctagaagaatcac |
44908501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 544 - 594
Target Start/End: Original strand, 44908363 - 44908418
Alignment:
| Q |
544 |
aatcttgttgataggggg-----aggacctcttttgctgcagatgagaatttgctc |
594 |
Q |
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| T |
44908363 |
aatcttgttgatagggggaggggaggacctcttttgctgcagatgagaatttgctc |
44908418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 876 - 914
Target Start/End: Original strand, 19880811 - 19880849
Alignment:
| Q |
876 |
gagatcaaagctatttgattaacttttaacttactgatt |
914 |
Q |
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| T |
19880811 |
gagatcaaagctatttgattagcttttaactcactgatt |
19880849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 869 - 906
Target Start/End: Original strand, 13037456 - 13037493
Alignment:
| Q |
869 |
tttttcagagatcaaagctatttgattaacttttaact |
906 |
Q |
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| T |
13037456 |
tttttcagagatcaaggctatttgattagcttttaact |
13037493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 868 - 921
Target Start/End: Complemental strand, 29586746 - 29586693
Alignment:
| Q |
868 |
ttttttcagagatcaaagctatttgattaacttttaacttactgattcatttca |
921 |
Q |
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||||||| |||||||| |||||||||||||||||| ||| ||| ||| |||||| |
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| T |
29586746 |
ttttttcggagatcaaggctatttgattaacttttgactcactaatttatttca |
29586693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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