View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_2D_low_40 (Length: 256)
Name: NF0438_2D_low_40
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 38828263 - 38828102
Alignment:
| Q |
1 |
gactgttctttcgagtgagacagtgatgaagacagtgtatgtatgaattgaattataaacaataaaacagatgtgtcatttaacaaccttgttcacgagc |
100 |
Q |
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| T |
38828263 |
gactgttctttcgagtgagacagtgatgaagacagtgtatgtatgaattgaattataaagaataaaacagatgtgtcatttaacaaccttgttcacgagc |
38828164 |
T |
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| Q |
101 |
catgttattttaattaagcttaataattggtgtgatatattgtcttaatcaatacttatagt |
162 |
Q |
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| T |
38828163 |
catgttattttaattaagcttaataattggtgtgatatattgtcttaatcaatacttatagt |
38828102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 38822822 - 38822736
Alignment:
| Q |
153 |
tacttatagtatacacaaaaaacatgttcccacggcatcggctcgtacctgtttgaggagttctaccgggtggtccagcgtcacagg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822822 |
tacttatagtatacacaaaaaacatgttcccacggcatcggctcgtacctgtttgaggagttctaccgggtggtccagcgtcacagg |
38822736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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