View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_2D_low_43 (Length: 255)

Name: NF0438_2D_low_43
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_2D_low_43
NF0438_2D_low_43
[»] chr3 (36 HSPs)
chr3 (42-236)||(9838357-9838551)
chr3 (42-236)||(9849235-9849429)
chr3 (42-236)||(10076762-10076956)
chr3 (58-236)||(10376224-10376402)
chr3 (47-173)||(10085609-10085735)
chr3 (47-173)||(10192529-10192655)
chr3 (58-234)||(10088302-10088478)
chr3 (58-236)||(10580113-10580291)
chr3 (58-234)||(10195185-10195361)
chr3 (60-236)||(10434423-10434599)
chr3 (42-236)||(8860782-8860976)
chr3 (42-204)||(10364209-10364371)
chr3 (65-215)||(10888825-10888975)
chr3 (65-215)||(11149254-11149404)
chr3 (72-215)||(11160417-11160560)
chr3 (65-236)||(11131405-11131576)
chr3 (52-214)||(11768740-11768902)
chr3 (1-46)||(9838302-9838347)
chr3 (1-46)||(9849180-9849225)
chr3 (65-214)||(10126435-10126584)
chr3 (1-46)||(10580042-10580087)
chr3 (65-214)||(13170550-13170699)
chr3 (65-214)||(13332423-13332572)
chr3 (155-214)||(13289274-13289333)
chr3 (65-214)||(10260205-10260354)
chr3 (155-214)||(13160589-13160648)
chr3 (1-42)||(10434627-10434668)
chr3 (116-211)||(10526929-10527024)
chr3 (155-214)||(13343698-13343757)
chr3 (1-42)||(10088235-10088276)
chr3 (1-42)||(10195118-10195159)
chr3 (1-42)||(10376428-10376469)
chr3 (1-42)||(11768679-11768720)
chr3 (116-172)||(10517058-10517114)
chr3 (116-172)||(10541544-10541600)
chr3 (116-172)||(11782422-11782478)
[»] scaffold0083 (2 HSPs)
scaffold0083 (60-234)||(50186-50360)
scaffold0083 (1-42)||(50388-50429)
[»] chr2 (2 HSPs)
chr2 (58-236)||(26906409-26906587)
chr2 (1-41)||(26906343-26906383)
[»] chr6 (1 HSPs)
chr6 (60-215)||(31680139-31680294)
[»] chr8 (3 HSPs)
chr8 (60-215)||(44958109-44958264)
chr8 (81-214)||(11484552-11484685)
chr8 (1-42)||(44958261-44958302)
[»] scaffold0002 (2 HSPs)
scaffold0002 (65-214)||(136289-136438)
scaffold0002 (155-214)||(146340-146399)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 42 - 236
Target Start/End: Original strand, 9838357 - 9838551
Alignment:
Q  42 cagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttga 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838357 cagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttga 9838456  T
Q  142 aagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838457 aagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 9838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 42 - 236
Target Start/End: Original strand, 9849235 - 9849429
Alignment:
Q  42 cagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttga 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849235 cagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttga 9849334  T
Q  142 aagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849335 aagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 9849429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 42 - 236
Target Start/End: Original strand, 10076762 - 10076956
Alignment:
Q  42 cagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttga 141  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10076762 cagttacaaacaaccatgctcaatcttcaggctgtactagatgatgcagaggagaagcagatcagcaatccccatgtcagacagtggcttgataacttga 10076861  T
Q  142 aagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  10076862 aagatgctgtctttgatgccgaggacttgctcaacgaaatcagttacgattcactgcgatgcaaggtggagaatgcacaagctcaaaacaaaact 10076956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 10376402 - 10376224
Alignment:
Q  58 tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga 157  Q
    |||||| |||||| | ||| || ||||||||||||||||||||||||| ||||||   |||||| || ||||||||| |||||||||||| | |||||||    
T  10376402 tgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcatcaatccttctgtcaagcaatggcttgatgacttgaaagatgctatctttga 10376303  T
Q  158 tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376302 tgctgaggacttgctcaatgaaatcagttatgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 10376224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 10085609 - 10085735
Alignment:
Q  47 acaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagat 146  Q
    |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10085609 acaaacaaccatgctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagat 10085708  T
Q  147 gttgtctttgatgctgaggatttgctc 173  Q
    ||| ||||||||||||| |||||||||    
T  10085709 gttttctttgatgctgaagatttgctc 10085735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 173
Target Start/End: Original strand, 10192529 - 10192655
Alignment:
Q  47 acaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagat 146  Q
    |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10192529 acaaacaaccatgctcaatcttcaggctgtactagatgatgcaaaggagaagcagatcagtaatccccatgtcaaacagtggcttgataacttgaaagat 10192628  T
Q  147 gttgtctttgatgctgaggatttgctc 173  Q
    ||| ||||||||||||| |||||||||    
T  10192629 gttttctttgatgctgaagatttgctc 10192655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 10088302 - 10088478
Alignment:
Q  58 tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga 157  Q
    |||||| |||||| | ||| || |||||||| |||||||||||||||| ||||||   ||||||||  ||||||||| |||||||||||| |||||||||    
T  10088302 tgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttga 10088401  T
Q  158 tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaa 234  Q
    ||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  10088402 tgctgaggacttgctcagcgaaatcagttatgattcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaa 10088478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 10580113 - 10580291
Alignment:
Q  58 tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga 157  Q
    |||||| |||||| | ||| || |||||||||||||||||||||||||  |||||   ||||||||  ||||||||| |||||||||||| | || ||||    
T  10580113 tgctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaataatcctgctgtcaaactatggcttgatgacttgaaagatgctatcattga 10580212  T
Q  158 tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  10580213 tgctgaggacttgctcaatgaaatcagttacgattccctgcgatgcaaggtggagaatacacaagctcaaaacaaaact 10580291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 58 - 234
Target Start/End: Original strand, 10195185 - 10195361
Alignment:
Q  58 tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga 157  Q
    |||||| |||||| | ||| || |||||||| |||||||||||||||| ||||||   ||||||||  ||||||||| |||||||||||| |||||||||    
T  10195185 tgctcactcttcaagttgtgctggatgatgcggaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttga 10195284  T
Q  158 tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaa 234  Q
    ||||||||| ||| ||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||    
T  10195285 tgctgaggacttgttcagcgaaatcagttatgattcccttcgatgcaaggtggagaatgcacaagctcaaaacaaaa 10195361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 60 - 236
Target Start/End: Complemental strand, 10434599 - 10434423
Alignment:
Q  60 ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg 159  Q
    |||| |||||| | ||| || ||||||||||||||||||||||||| ||| ||   ||||||||| ||||||||| |||||||||||| |||||||||||    
T  10434599 ctcactcttcaagttgtgctggatgatgcagaggagaagcagatcaacaaacctgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatg 10434500  T
Q  160 ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    | ||||| |||||||||||||||||||| |||||||| |||| ||||||||||||| || | |||||||||||||||    
T  10434499 ccgaggacttgctcaacgaaatcagttatgattcccttcgatccaaggtggagaatacacatgctcaaaacaaaact 10434423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 236
Target Start/End: Original strand, 8860782 - 8860976
Alignment:
Q  42 cagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttga 141  Q
    ||||||||||||||  ||||   |||||| ||||| || ||||||||||||||||||||||||| |||||    ||||||||| ||||||||| ||||||    
T  8860782 cagttacaagcaacgctgctggttcttcaagctgtgctggatgatgcagaggagaagcagatcaacaatcgtgctgtcaaacaatggcttgatgacttga 8860881  T
Q  142 aagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    |||||| | |||||||||||||||||||||||||| |||||||||| |||||  | ||||||||||||||| || || |||||  ||||||||||    
T  8860882 aagatgctctctttgatgctgaggatttgctcaaccaaatcagttatgattcattacgatgcaaggtggaggatacacaagctgcaaacaaaact 8860976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 10364371 - 10364209
Alignment:
Q  42 cagttacaagcaaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttga 141  Q
    ||||||||| ||||  |||||| |||||| | ||| || ||||| ||||| ||||||||||||| ||||||   ||||||||| |||||||||  |||||    
T  10364371 cagttacaaacaacactgctcactcttcaagttgtgctggatgacgcagaagagaagcagatcaacaatcctgctgtcaaacaatggcttgatggcttga 10364272  T
Q  142 aagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgca 204  Q
    |||||| |||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||    
T  10364271 aagatgctgtctttgatgccgaggatttgcttcacgaaatcagttatgattccctgcgatgca 10364209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 10888825 - 10888975
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    |||||| ||||| || |||||||| |||||||||||||||| ||| |    ||||||||| ||||||||| |||||||||||| |||||||||||| |||    
T  10888825 tcttcaagctgtgctggatgatgctgaggagaagcagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgcggag 10888924  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaat 215  Q
    |||||||| ||| |||| ||||| || ||  ||||||||||||||||||||    
T  10888925 gatttgctgaaccaaattagttatgaatcattgcgatgcaaggtggagaat 10888975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 215
Target Start/End: Complemental strand, 11149404 - 11149254
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    |||||| ||||| || |||||||| || ||||||||||||| ||||||   ||||||||| ||||||||| |||||||||||| | |||||||||| |||    
T  11149404 tcttcaagctgtgctggatgatgctgatgagaagcagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttgatgccgag 11149305  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaat 215  Q
    |||||||| ||  |||| ||||| || || |||||||||||||||||||||    
T  11149304 gatttgctgaatcaaattagttatgaatcactgcgatgcaaggtggagaat 11149254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 11160560 - 11160417
Alignment:
Q  72 gctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgc 171  Q
    ||||| || |||||||||||||||||| |||||| ||| |    ||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||    
T  11160560 gctgtgctggatgatgcagaggagaagtagatcaacaaccgtgctgtcaaacaatggcttgatgacttgaaagatgctgtctttgatgccgaggatttgc 11160461  T
Q  172 tcaacgaaatcagttacgattccctgcgatgcaaggtggagaat 215  Q
    | ||  |||| ||||| || || |||||||||||||||||||||    
T  11160460 tgaatcaaattagttatgaatcactgcgatgcaaggtggagaat 11160417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 11131576 - 11131405
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    |||||| ||||| || |||||||| |||||||||||||||| ||| |    ||||||| | ||| ||||| |||||||||||| | |||||||||| |||    
T  11131576 tcttcaagctgtgctggatgatgctgaggagaagcagatcaacaaccgtgctgtcaaaaaatgggttgatgacttgaaagatgctatctttgatgcggag 11131477  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    |||||||| ||  |||| ||||| || || ||||||||||||||||||||| || |||||  ||||||||||    
T  11131476 gatttgctgaatcaaattagttatgagtcactgcgatgcaaggtggagaatacacaagctgcaaacaaaact 11131405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 214
Target Start/End: Original strand, 11768740 - 11768902
Alignment:
Q  52 caaccatgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgt 151  Q
    ||||| ||||||  ||||||||||| || |||||||| |||||||||||||| | |||||    ||||||||| ||||||||| |||||||||| | | |    
T  11768740 caaccctgctcacacttcaggctgtactggatgatgcggaggagaagcagatgaacaatcttgctgtcaaacaatggcttgatgacttgaaagacgctat 11768839  T
Q  152 ctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||||||||||||| ||| |  |||| ||||| || ||||| ||||||||| |||||||    
T  11768840 ctttgatgctgaggatttactcgatcaaataagttatgactccctccgatgcaagatggagaa 11768902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9838347 - 9838302
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagtt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9838347 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagtt 9838302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 9849225 - 9849180
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagtt 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  9849225 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagtt 9849180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 10126435 - 10126584
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    |||| ||| ||| |||||||||||||||||||||||||||  ||| |||    ||||||| ||||| |||   || |||||||   ||| ||||||||||    
T  10126435 tcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggctggatcggttaaaagatgcaatctatgatgctgag 10126534  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||||||  ||||||| ||| || |||| ||||||||| |||||||    
T  10126535 gatttgctcaatcaaatcagctacaatgccctacgatgcaagctggagaa 10126584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10580087 - 10580042
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactcagtt 46  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  10580087 tgagacattgagcttagtgtttttgatgtaatcaagaaactcagtt 10580042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 13170550 - 13170699
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    ||||||||| ||||| |||||||||||  ||||||| |||| |||  |   ||||||||| ||| | ||| |  |||||||||   ||| ||||||||||    
T  13170550 tcttcaggcggttcttgatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgag 13170649  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||| ||| |||||| |||||| ||||| ||||| |||||||||||    
T  13170650 gatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaa 13170699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 13332423 - 13332572
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    ||||||||| || || |||||||||||  ||||||| |||| |||  |   ||||||||| ||| | ||| |  |||||||||   ||| ||||||||||    
T  13332423 tcttcaggcggtgctggatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggttggatcagctgaaagatgcaatctatgatgctgag 13332522  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||| ||| |||||| |||||| ||||||||||| |||||||||||    
T  13332523 gatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaa 13332572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 13289274 - 13289333
Alignment:
Q  155 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||| |||||||||||    
T  13289274 tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtaaggtggagaa 13289333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 214
Target Start/End: Original strand, 10260205 - 10260354
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    |||| ||| ||| |||||||||||||||||||||||||||  ||| |||    ||||||| ||| | |||   || |||||||   ||| ||||||||||    
T  10260205 tcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaaacaatggttggatcggttaaaagatgcaatctatgatgctgag 10260304  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||||||  ||||||| ||| || |||| ||||||||| |||||||    
T  10260305 gatttgctcaataaaatcagctacaatgccctacgatgcaagctggagaa 10260354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 13160589 - 13160648
Alignment:
Q  155 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||| | |||||||||    
T  13160589 tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaa 13160648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10434627 - 10434668
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactc 42  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  10434627 tgagtcattgagcttggtgtttttgatgtaatcacgaaactc 10434668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 10526929 - 10527024
Alignment:
Q  116 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtgga 211  Q
    ||||||||| |||||| || ||||||||||||   | ||||||||||| ||||||||  ||  |||||| |||||| | ||||| |||||||||||    
T  10526929 tgtcaaacaatggcttcatgacttgaaagatgcaatatttgatgctgaagatttgcttgacttaatcagctacgatgctctgcggtgcaaggtgga 10527024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 13343698 - 13343757
Alignment:
Q  155 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||||||||||||| ||| ||||||  ||||| ||||||||||| | |||||||||    
T  13343698 tgatgctgaggatttgcttaaccaaatcaactacgactccctgcgatgtacggtggagaa 13343757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10088276 - 10088235
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactc 42  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  10088276 tgagacattcaacttggtgtttttgatgtaatcacgaaactc 10088235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10195159 - 10195118
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactc 42  Q
    ||||||||| | ||| ||||||||||||||||||||||||||    
T  10195159 tgagacattcaacttggtgtttttgatgtaatcacgaaactc 10195118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10376428 - 10376469
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactc 42  Q
    |||||||||||| || |||||||||||||||||| |||||||    
T  10376428 tgagacattgagtttggtgtttttgatgtaatcaagaaactc 10376469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11768720 - 11768679
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactc 42  Q
    ||||||||| ||||| |||||||||||||||||| |||||||    
T  11768720 tgagacattcagcttggtgtttttgatgtaatcaagaaactc 11768679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 10517058 - 10517114
Alignment:
Q  116 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct 172  Q
    ||||||||| ||||||||| ||||||||||||   |||||||| |||| ||||||||    
T  10517058 tgtcaaacaatggcttgatgacttgaaagatgcaatctttgattctgaagatttgct 10517114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 10541544 - 10541600
Alignment:
Q  116 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct 172  Q
    |||||| || ||||||||| ||||||||||||   ||||||||||||| ||||||||    
T  10541544 tgtcaagcaatggcttgatgacttgaaagatgcaatctttgatgctgaagatttgct 10541600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 11782478 - 11782422
Alignment:
Q  116 tgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgct 172  Q
    ||||||||| ||||||||| ||||||||||||   | ||||||||||| ||||||||    
T  11782478 tgtcaaacaatggcttgatgacttgaaagatgcaatatttgatgctgaagatttgct 11782422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 50360 - 50186
Alignment:
Q  60 ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg 159  Q
    |||| |||||| | ||| || |||||||| |||||||||||||||| ||||||   ||||||||  ||||||||| |||||||||||| |||||||||||    
T  50360 ctcactcttcaagttgtgctggatgatgctgaggagaagcagatcaacaatcctgctgtcaaactatggcttgatgacttgaaagatgctgtctttgatg 50261  T
Q  160 ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaa 234  Q
    ||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  50260 ctgaggacttgctcagcgaaatcagttatgattccctgcgatgcaaggtggagaatgcaaaagctcaaagcaaaa 50186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 50388 - 50429
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactc 42  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  50388 tgagacattgagcttagtgtttttgatgtaatcaagaaactc 50429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 58 - 236
Target Start/End: Original strand, 26906409 - 26906587
Alignment:
Q  58 tgctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttga 157  Q
    |||||| ||| |||| ||| || ||||||||||||||||| ||||||| ||||||   ||||||||| ||||||||| |||||||||||| | |||||||    
T  26906409 tgctcactctgcaggttgtgctggatgatgcagaggagaaacagatcaacaatcctgctgtcaaacaatggcttgatgacttgaaagatgctatctttga 26906508  T
Q  158 tgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaatgcaaaagctcaaaacaaaact 236  Q
    || |||||| |||||||||||||| ||||| ||||||||||||||||| || |||||| || |||||||||||||||||    
T  26906509 tgttgaggacttgctcaacgaaattagttatgattccctgcgatgcaaagtcgagaatacacaagctcaaaacaaaact 26906587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26906383 - 26906343
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaact 41  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  26906383 tgagacattgagcttggtgtttttgatgtaatcaagaaact 26906343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 31680294 - 31680139
Alignment:
Q  60 ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg 159  Q
    |||| |||||| |||||||| |||||||| ||| |||||||||||| |||||  | ||||||||| ||||||||| | ||||||||||   | | |||||    
T  31680294 ctcactcttcatgctgttcttgatgatgctgagaagaagcagatcaacaatcttcctgtcaaacaatggcttgatgagttgaaagatgcaatatatgatg 31680195  T
Q  160 ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaat 215  Q
    ||||||||||||||||| | |||||||| |||| |||  || ||||||||||||||    
T  31680194 ctgaggatttgctcaaccagatcagttatgattgccttagaagcaaggtggagaat 31680139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 44958264 - 44958109
Alignment:
Q  60 ctcaatcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatg 159  Q
    |||| |||||||| ||| || |||||||||||||||||||| |||| ||| |    ||||||||| ||||||||| |||||||| ||    | |||||||    
T  44958264 ctcactcttcaggttgtgcttgatgatgcagaggagaagcaaatcaccaaccttactgtcaaacaatggcttgatgacttgaaaaatacaatatttgatg 44958165  T
Q  160 ctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaat 215  Q
    | ||||||||||||||| |||| || || ||||||||||| ||||| |||||||||    
T  44958164 ccgaggatttgctcaaccaaattagctatgattccctgcgttgcaaagtggagaat 44958109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 214
Target Start/End: Original strand, 11484552 - 11484685
Alignment:
Q  81 gatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgaggatttgctcaacgaaa 180  Q
    ||||||||||| ||||||||||||    | ||| |  ||||||| |||||||||   ||||||||||   |||||||||||||||||||||| || ||||    
T  11484552 gatgatgcagaagagaagcagatccttcaacccaaaatcaaacaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgcttaatgaaa 11484651  T
Q  181 tcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||| || ||| || ||||||||||||| |||||    
T  11484652 tcagctatgatgccttgcgatgcaaggtagagaa 11484685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44958261 - 44958302
Alignment:
Q  1 tgagacattgagcttagtgtttttgatgtaatcacgaaactc 42  Q
    ||||||||||| ||| |||||||||||||||||| |||||||    
T  44958261 tgagacattgatcttggtgtttttgatgtaatcaagaaactc 44958302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 214
Target Start/End: Complemental strand, 136438 - 136289
Alignment:
Q  65 tcttcaggctgttctagatgatgcagaggagaagcagatcagcaatccccatgtcaaacagtggcttgataacttgaaagatgttgtctttgatgctgag 164  Q
    ||||||||| ||||| |||||||||||  ||||||| |||| |||  |   ||||||||| ||| | ||| |  |||||||||   ||| ||||||||||    
T  136438 tcttcaggcggttcttgatgatgcagaacagaagcaaatcaccaacactgctgtcaaacaatggatggatcaactgaaagatgcaatctatgatgctgag 136339  T
Q  165 gatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||| ||| |||||| |||||| ||||| ||||| |||||||||||    
T  136338 gatttgcttaaccaaatcaattacgactccctccgatgtaaggtggagaa 136289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 146399 - 146340
Alignment:
Q  155 tgatgctgaggatttgctcaacgaaatcagttacgattccctgcgatgcaaggtggagaa 214  Q
    |||||||||||||||||| ||| |||||| |||||| ||||||||||| | |||||||||    
T  146399 tgatgctgaggatttgcttaaccaaatcaattacgactccctgcgatgtacggtggagaa 146340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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