View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_2D_low_48 (Length: 252)
Name: NF0438_2D_low_48
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42838238 - 42838474
Alignment:
| Q |
1 |
aagaccctacacctgatttgcctccaacaatgatgcgtgctcctcctcctcctctcaaaccactaaagcagcagcgtgctgagtattgttctgaagcgga |
100 |
Q |
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| T |
42838238 |
aagaccctacacctgatttgcctccaacaatgatgtgtgctcctcctcctcctctcaaaccactaaagcagcagcgtgctgagtattgttctgaagcgga |
42838337 |
T |
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| Q |
101 |
actaggccaatcacaatggatcaactatgatatacgtaactttagaatggatatattaggtaagtttggagtaataatggctgatccaccgtgggacatt |
200 |
Q |
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| T |
42838338 |
actaggccaaccacaatggatcaactgtgatatacgtaactttagaatggatatattaggtaagtttggagtaataatggctgatccaccgtgggacatt |
42838437 |
T |
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| Q |
201 |
cacatggagctgccttatggaacaatggcggatgatg |
237 |
Q |
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| T |
42838438 |
cacatggagctgccttatggaacaatggcggatgatg |
42838474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 43913342 - 43913108
Alignment:
| Q |
3 |
gaccctacacctgatttgcctccaacaatgatgcgtgctcctcctcctcctctcaaaccactaaagcagcagcgtgctgagtattgttctgaagcggaac |
102 |
Q |
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| T |
43913342 |
gaccctacacctgatttgcctccaacaatgacgggtgctcttactcctcctcccaaaccactaaaacagcagcgtgctgagtattgttctgaagtggaac |
43913243 |
T |
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| Q |
103 |
taggccaatcacaatggatcaactatgatatacgtaactttagaatggatatattaggtaagtttggagtaataatggctgatccaccgtgggacattca |
202 |
Q |
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| T |
43913242 |
ttggtgaaccacaatggatcaactgtgatatacgtaactttagaatggacatattaggtaagtttggagtaataatggctgatccaccgtgggacattca |
43913143 |
T |
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| Q |
203 |
catggagctgccttatggaacaatggcggatgatg |
237 |
Q |
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| T |
43913142 |
catggagcttccttatggaacaatggcggatgatg |
43913108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 8624149 - 8624244
Alignment:
| Q |
141 |
tttagaatggatatattaggtaagtttggagtaataatggctgatccaccgtgggacattcacatggagctgccttatggaacaatggcggatgatg |
237 |
Q |
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| T |
8624149 |
tttagaatggacgaattaggtaagtttggagtaataatggctgatccaccatgggacattcacattgagctgcc-tatggaacaattgccgatgatg |
8624244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 8634861 - 8634815
Alignment:
| Q |
191 |
gtgggacattcacatggagctgccttatggaacaatggcggatgatg |
237 |
Q |
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| T |
8634861 |
gtgggacattcacatggagttgccttatggaacaatgactgatgatg |
8634815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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