View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_2D_low_49 (Length: 248)

Name: NF0438_2D_low_49
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_2D_low_49
NF0438_2D_low_49
[»] scaffold0248 (1 HSPs)
scaffold0248 (1-229)||(16216-16443)
[»] chr6 (5 HSPs)
chr6 (99-229)||(23599900-23600030)
chr6 (164-229)||(11302282-11302347)
chr6 (174-229)||(17275116-17275171)
chr6 (173-229)||(17190768-17190824)
chr6 (174-215)||(17270181-17270222)
[»] chr8 (5 HSPs)
chr8 (99-225)||(36911894-36912019)
chr8 (98-219)||(10739111-10739231)
chr8 (90-227)||(10734067-10734203)
chr8 (73-221)||(15007150-15007296)
chr8 (116-196)||(17909919-17909999)
[»] chr3 (3 HSPs)
chr3 (73-227)||(44126650-44126804)
chr3 (73-185)||(13921708-13921818)
chr3 (90-185)||(12988196-12988290)
[»] chr7 (5 HSPs)
chr7 (116-187)||(33190285-33190356)
chr7 (116-187)||(39865558-39865629)
chr7 (105-187)||(26617716-26617795)
chr7 (175-226)||(35338990-35339041)
chr7 (90-139)||(7280254-7280303)
[»] chr1 (5 HSPs)
chr1 (73-227)||(29530197-29530352)
chr1 (98-187)||(40274328-40274414)
chr1 (74-143)||(26023622-26023691)
chr1 (99-221)||(29547858-29547983)
chr1 (133-187)||(40279149-40279203)
[»] chr4 (12 HSPs)
chr4 (79-185)||(54687605-54687711)
chr4 (79-221)||(22746639-22746779)
chr4 (119-183)||(26997338-26997402)
chr4 (120-181)||(54678526-54678587)
chr4 (116-187)||(14000179-14000248)
chr4 (73-183)||(26992141-26992254)
chr4 (93-187)||(52311172-52311266)
chr4 (122-196)||(13994866-13994938)
chr4 (105-187)||(12746495-12746577)
chr4 (130-227)||(6408035-6408130)
chr4 (99-156)||(6408211-6408268)
chr4 (99-151)||(6408124-6408176)
[»] chr5 (7 HSPs)
chr5 (116-187)||(19779937-19780008)
chr5 (179-229)||(28663655-28663705)
chr5 (73-151)||(16633183-16633261)
chr5 (78-187)||(19783147-19783256)
chr5 (90-151)||(25214345-25214406)
chr5 (90-151)||(25278495-25278556)
chr5 (174-226)||(24228304-24228356)
[»] chr2 (1 HSPs)
chr2 (179-229)||(11312188-11312239)


Alignment Details
Target: scaffold0248 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 16443 - 16216
Alignment:
Q  1 gtataatgtctgcaatttatttgactttcactttaaatcaaaggttcaccaccactacccaagcatcatcccattgatagagctttgtactgataacatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||  |||||||||| ||    
T  16443 gtataatgtctgcaatttatttgactttcactttaaatcaaaggttcaacaccactacccaagcatcatctgattgatagagcttcatactgataacgtg 16344  T
Q  101 ttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttttttacatggca 200  Q
    | | ||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||  ||||||| |||||||| ||||||| |||||||||||    
T  16343 t-atgaaataaactcaaagcataagatcaaagaagaagaggaagaaaaatataaaagcactttgtattattttcttcacaggtgtgttctttacatggca 16245  T
Q  201 atgtagatcctatatataggatacaaaag 229  Q
    |||||| |||||| |||||||||||||||    
T  16244 atgtaggtcctatttataggatacaaaag 16216  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 229
Target Start/End: Original strand, 23599900 - 23600030
Alignment:
Q  99 tgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttttttacatgg 198  Q
    ||||| ||||||| || |||||||||||||||||||||||| |||||| |||||||||||| ||  |||||||||||||| |||||| |  ||||||| |    
T  23599900 tgttaagaaataaactaaaagcacaagatcaaagaagaagatgaagaagaagatgaaagcattttgtattattctcttcataagtgtatactttacatag 23599999  T
Q  199 caatgtagatcctatatataggatacaaaag 229  Q
     ||||||| |||||| ||||||||| |||||    
T  23600000 taatgtaggtcctatttataggatataaaag 23600030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 11302347 - 11302282
Alignment:
Q  164 atattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaag 229  Q
    |||||||||||||||||| | |||||||||||||| ||||||  |||||| |||||||||||||||    
T  11302347 atattattctcttcacaaatatgttttttacatggtaatgtaagtcctatttataggatacaaaag 11302282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 17275116 - 17275171
Alignment:
Q  174 cttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaag 229  Q
    |||| |||||||||| ||||||||||||||||| |||||| |||| ||||||||||    
T  17275116 cttctcaagtgtgttctttacatggcaatgtaggtcctatttatatgatacaaaag 17275171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 17190824 - 17190768
Alignment:
Q  173 tcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaaag 229  Q
    ||||| ||||||||   |||||||||||||||||||||||| |||||||| ||||||    
T  17190824 tcttctcaagtgtgccctttacatggcaatgtagatcctatttataggatgcaaaag 17190768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 17270181 - 17270222
Alignment:
Q  174 cttcacaagtgtgttttttacatggcaatgtagatcctatat 215  Q
    |||| |||||||||| ||||||||||||||||| ||||||||    
T  17270181 cttctcaagtgtgttctttacatggcaatgtaggtcctatat 17270222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 36911894 - 36912019
Alignment:
Q  99 tgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttttttacatgg 198  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||||| ||| ||||| |||||  |||||||||||||| ||||||| |  |||||| |    
T  36911894 tgttatgaaataaactaaaagcacaagatcaaagaagaagaggaagaagaaggtgaaaacactttttattattctcttcagaagtgtg-tcattacattg 36911992  T
Q  199 caatgtagatcctatatataggataca 225  Q
     ||||||| |||||| |||||||||||    
T  36911993 taatgtaggtcctatttataggataca 36912019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 10739231 - 10739111
Alignment:
Q  98 atgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttttttacatg 197  Q
    |||||| |||||||  | ||||||||||||||||||||||||| | | | |||||||||||||||  ||||||||||||||||||| |  | ||||||||    
T  10739231 atgttaagaaataaagtaaaagcacaagatcaaagaagaagagaatggagaagatgaaagcactttgtattattctcttcacaagtat-atctttacatg 10739133  T
Q  198 gcaatgtagatcctatatatag 219  Q
    ||||||||| |||||| |||||    
T  10739132 gcaatgtaggtcctatttatag 10739111  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 227
Target Start/End: Complemental strand, 10734203 - 10734067
Alignment:
Q  90 ctgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttt 189  Q
    |||||||| ||||| |||||||  | || ||||||||||||| || ||||| | ||| ||||||||| |||||  ||||||||||||||||||| |  |     
T  10734203 ctgataacgtgttaagaaataaagtaaatgcacaagatcaaacaaaaagagaatgaagaagatgaaaacactttgtattattctcttcacaagtat-atc 10734105  T
Q  190 tttacatggcaatgtagatcctatatataggatacaaa 227  Q
    |||||||| |||||||| |||||| |||||||||||||    
T  10734104 tttacatgacaatgtaggtcctatttataggatacaaa 10734067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 15007296 - 15007150
Alignment:
Q  73 attgatagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattc 172  Q
    ||||||||||||| || |||| ||| ||||| |||||||  | |||||||| |||||||||||| ||||||| | |||||||||||||||  ||||| ||    
T  15007296 attgatagagcttcgtgctgagaacgtgttatgaaataaagtaaaagcacaggatcaaagaagatgaggaaggagaagatgaaagcactttgtatta-tc 15007198  T
Q  173 tcttcacaagtgtgttttttacatggcaatgtagatcctatatatagga 221  Q
    ||||||| |||||| | ||||||| | ||||||| ||| || |||||||    
T  15007197 tcttcaccagtgtg-tctttacattgtaatgtaggtcccatttatagga 15007150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 17909999 - 17909919
Alignment:
Q  116 aaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttttttacat 196  Q
    |||||||||||||||| |||| ||||||| | |||||||||| ||||  ||||||||||||| |||||||||| |||||||    
T  17909999 aaagcacaagatcaaaaaagatgaggaaggagaagatgaaagtactttgtattattctcttctcaagtgtgttctttacat 17909919  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 44126650 - 44126804
Alignment:
Q  73 attgatagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattc 172  Q
    |||||| |||||| ||  ||||||||||||| |||||||  | |||||| ||||||||| |||||||| ||||| |||||||||| ||||  ||||||||    
T  44126650 attgatcgagcttcgtgttgataacatgttaagaaataaattaaaagcataagatcaaataagaagagaaagaagaagatgaaagtactttgtattattc 44126749  T
Q  173 tcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaa 227  Q
    |||||||||||||||  || ||||  |||| ||| |||||| ||||||| |||||    
T  44126750 tcttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaaa 44126804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 13921818 - 13921708
Alignment:
Q  73 attgatagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattc 172  Q
    |||| |||||||| || |||||||| |||||  |||||| |  |||| |||||||||||||||||||||||||| | ||||||||  |||  | ||||||    
T  13921818 attgttagagcttcgtgctgataacgtgttataaaataaacataaagaacaagatcaaagaagaagaggaagaagatgatgaaag--ctttgtgttattc 13921721  T
Q  173 tcttcacaagtgt 185  Q
    |||||||||||||    
T  13921720 tcttcacaagtgt 13921708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 12988290 - 12988196
Alignment:
Q  90 ctgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgt 185  Q
    |||||||  |||||| |||||| || |||| |||||||||||||||||||  |||| ||| ||||||||  ||| |||||||||||||||||||||    
T  12988290 ctgataatgtgttacaaaataaactaaaagtacaagatcaaagaagaagaaaaagataaaaatgaaagcttttc-tattattctcttcacaagtgt 12988196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 33190285 - 33190356
Alignment:
Q  116 aaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||||||    
T  33190285 aaagcacaagatcaaagaagaagaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgt 33190356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 39865629 - 39865558
Alignment:
Q  116 aaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||  ||||||||||||||  |||||||    
T  39865629 aaagcacaagatcaaagaagaagaggaaggagaagatgaaagcactttgtattattctcttcaagagtgtgt 39865558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 26617716 - 26617795
Alignment:
Q  105 gaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    ||||||| || ||||||||||||||||||   |||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  26617716 gaaataaactaaaagcacaagatcaaaga---agaggaagaagaagatgaaaacactttgtattattctcttcacaagtgtgt 26617795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 35338990 - 35339041
Alignment:
Q  175 ttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaa 226  Q
    ||||||||||| || |||||||| ||||||||||||||| ||||||||||||    
T  35338990 ttcacaagtgtattctttacatgacaatgtagatcctatttataggatacaa 35339041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 7280303 - 7280254
Alignment:
Q  90 ctgataacatgttacgaaataatctcaaagcacaagatcaaagaagaaga 139  Q
    |||||||||||||| ||||||| || |||| |||||||||||||||||||    
T  7280303 ctgataacatgttatgaaataaactaaaagtacaagatcaaagaagaaga 7280254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 29530352 - 29530197
Alignment:
Q  73 attgatagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattc 172  Q
    |||| |||||||| || |||||||||||| | ||||||| || |||||||||||||||||||||||||||||||  |||||||| |||||  ||||||||    
T  29530352 attgttagagcttcgtgctgataacatgtaatgaaataaactaaaagcacaagatcaaagaagaagaggaagaaggagatgaaaacactttgtattattc 29530253  T
Q  173 t-cttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaa 227  Q
    |  ||  |||||||||| |||||||  |||| ||| |||||| |||| || |||||    
T  29530252 tatttttcaagtgtgttctttacattacaatataggtcctatttatatgacacaaa 29530197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 40274328 - 40274414
Alignment:
Q  98 atgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    |||||| | ||||| |||||| || |||||||||||   |||||||| | |||||||||||||||  |||||||||||||||||||||||    
T  40274328 atgttatgcaataaactcaaaacaaaagatcaaaga---agaggaaggagaagatgaaagcactttgtattattctcttcacaagtgtgt 40274414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 26023691 - 26023622
Alignment:
Q  74 ttgatagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaa 143  Q
    |||||||||||| || |||||||| ||||| |||||||  | ||||||||||||||||||||| ||||||    
T  26023691 ttgatagagcttagtgctgataacgtgttaagaaataaagtaaaagcacaagatcaaagaagatgaggaa 26023622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 29547983 - 29547858
Alignment:
Q  99 tgttacgaaataatctcaaagcacaagatcaaagaagaaga--ggaagaaaaagatgaaagcacttcatattattctc-ttcacaagtgtgttttttaca 195  Q
    ||||| ||||||| || |||||||||||| |||||||||||  ||||||| |||||||||  | ||  |||||||||| ||  |||||||||| ||||||    
T  29547983 tgttatgaaataaactaaaagcacaagattaaagaagaagatcggaagaagaagatgaaaatattttgtattattctctttttcaagtgtgttctttaca 29547884  T
Q  196 tggcaatgtagatcctatatatagga 221  Q
    |  |||| ||| |||||| |||||||    
T  29547883 ttacaatataggtcctatttatagga 29547858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 40279149 - 40279203
Alignment:
Q  133 aagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    |||||||| ||| | ||||||||| ||||| |||||||||||||||||| |||||    
T  40279149 aagaagagaaaggagaagatgaaaacactttatattattctcttcacaaatgtgt 40279203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 54687605 - 54687711
Alignment:
Q  79 agagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttca 178  Q
    ||||||| || |||||||| ||||| |||||||  | ||||||||| ||||||||||||||||||| | ||||||||| |||||  ||||||||||||||    
T  54687605 agagcttcgtgctgataacgtgttaagaaataaagtaaaagcacaaaatcaaagaagaagaggaaggagaagatgaaatcactttgtattattctcttca 54687704  T
Q  179 caagtgt 185  Q
    |||||||    
T  54687705 caagtgt 54687711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 221
Target Start/End: Complemental strand, 22746779 - 22746639
Alignment:
Q  79 agagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttca 178  Q
    ||||||| ||||||||||| ||||| ||||||| |  ||| || |||||||||||||| ||||| ||| |||||||||| ||||  ||||||||||||||    
T  22746779 agagcttcgtactgataacgtgttaagaaataaacaaaaa-cataagatcaaagaagacgaggaggaagaagatgaaagtactttgtattattctcttca 22746681  T
Q  179 caagtgtgttttttacatggcaatgtagatcctatatatagga 221  Q
    |||| ||| |  |||||| | ||||||| |||||| |||||||    
T  22746680 caagggtg-tcattacattgtaatgtaggtcctatttatagga 22746639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 26997402 - 26997338
Alignment:
Q  119 gcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagt 183  Q
    |||||||||||||||||||||| ||| | |||||||||||||||  |||||||||||||||||||    
T  26997402 gcacaagatcaaagaagaagagaaaggagaagatgaaagcactttgtattattctcttcacaagt 26997338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 54678526 - 54678587
Alignment:
Q  120 cacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaa 181  Q
    ||||||||||||||||||||||||| | ||||||||| |||||  |||||||||||||||||    
T  54678526 cacaagatcaaagaagaagaggaaggagaagatgaaaacactttttattattctcttcacaa 54678587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 14000248 - 14000179
Alignment:
Q  116 aaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    |||| |||||||||||||||||||||||||| | ||||||||  |||  | |||||||||||||||||||||    
T  14000248 aaagaacaagatcaaagaagaagaggaagaagatgatgaaag--ctttgtgttattctcttcacaagtgtgt 14000179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 26992254 - 26992141
Alignment:
Q  73 attgatagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcact---tcatatta 169  Q
    |||| ||||||||  | |||||||| ||||| |||||||  | || |||||||||||||||||||||||||  | |||||||||| |||   |  |||||    
T  26992254 attgttagagcttcatgctgataacgtgttaagaaataaagtaaatgcacaagatcaaagaagaagaggaaagagaagatgaaagtactttgtattatta 26992155  T
Q  170 ttctcttcacaagt 183  Q
    ||||||||||||||    
T  26992154 ttctcttcacaagt 26992141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 52311172 - 52311266
Alignment:
Q  93 ataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    ||||| |||||  |||||| || ||| |||||||||||||||| ||| |||||| | ||||||| || ||  ||||||||||||||||| |||||    
T  52311172 ataacgtgttataaaataaactaaaaacacaagatcaaagaagtagaagaagaagatgatgaaaacattttgtattattctcttcacaaatgtgt 52311266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 13994938 - 13994866
Alignment:
Q  122 caagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttttttacat 196  Q
    ||||||||||||| ||||||||||| | ||||||||  |||  | |||||||||||||||||||||  |||||||    
T  13994938 caagatcaaagaaaaagaggaagaagatgatgaaag--ctttgtgttattctcttcacaagtgtgtactttacat 13994866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 12746495 - 12746577
Alignment:
Q  105 gaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    ||||||| || ||| |||||||| |||||||||||||| ||| |||||||||| |  |  ||||||||| |||| ||||||||    
T  12746495 gaaataaactaaaaacacaagattaaagaagaagaggaggaagaagatgaaagtatattgtattattcttttcataagtgtgt 12746577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 6408130 - 6408035
Alignment:
Q  130 aagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaaa 227  Q
    |||||||||| |||||| |||||||||| | ||  ||||||||||||||||||||||   ||||| | ||||| ||| |||||| ||||||| |||||    
T  6408130 aagaagaagaagaagaagaagatgaaag-attttgtattattctcttcacaagtgtg-cctttactttgcaatataggtcctatttataggacacaaa 6408035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 6408268 - 6408211
Alignment:
Q  99 tgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaa 156  Q
    ||||| ||||||| || ||||||||||||||| |||||||| |||||| | |||||||    
T  6408268 tgttatgaaataaactaaaagcacaagatcaatgaagaagaagaagaagatgatgaaa 6408211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 6408176 - 6408124
Alignment:
Q  99 tgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaaga 151  Q
    ||||| ||||||| || ||||||||||||| |||||||||| |||||| ||||    
T  6408176 tgttatgaaataaacttaaagcacaagatcgaagaagaagaagaagaagaaga 6408124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 19779937 - 19780008
Alignment:
Q  116 aaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttcacaagtgtgt 187  Q
    ||||||||||||||||||||||||||||  | ||||| |||||||||  ||||||||||||||  |||||||    
T  19779937 aaagcacaagatcaaagaagaagaggaatgagaagataaaagcactttgtattattctcttcaagagtgtgt 19780008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 28663655 - 28663705
Alignment:
Q  179 caagtgtgttttttacatggcaatgtagatcctatatataggatacaaaag 229  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  28663655 caagtgtgttctttacatgacaatgtagatcctatttataggatacaaaag 28663705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 16633183 - 16633261
Alignment:
Q  73 attgatagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaaga 151  Q
    |||| |||||||| || |||||||| |||||  |||||| || ||||||||||||| |||||||||| |||||| ||||    
T  16633183 attgttagagcttcgtgctgataacgtgttataaaataaactaaaagcacaagatcgaagaagaagaagaagaagaaga 16633261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 19783147 - 19783256
Alignment:
Q  78 tagagctttgtactgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaagatgaaagcacttcatattattctcttc 177  Q
    |||||||| || || ||||| |||||  ||||||  | |||||| ||||||||| |||||||| ||| | ||||| |||||||||  |||||||||||||    
T  19783147 tagagcttcgtgctaataacgtgttataaaataaagtaaaagcataagatcaaaaaagaagagaaaggagaagataaaagcactttgtattattctcttc 19783246  T
Q  178 acaagtgtgt 187  Q
    |  |||||||    
T  19783247 aagagtgtgt 19783256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 25214345 - 25214406
Alignment:
Q  90 ctgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaaga 151  Q
    |||||||| ||||| ||||||| || ||||||| ||||||||||||| || |||||| ||||    
T  25214345 ctgataacgtgttatgaaataaactaaaagcactagatcaaagaagaggaagaagaagaaga 25214406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 25278495 - 25278556
Alignment:
Q  90 ctgataacatgttacgaaataatctcaaagcacaagatcaaagaagaagaggaagaaaaaga 151  Q
    |||||||| ||||| ||||||| || ||||||| ||||||||||||| || |||||| ||||    
T  25278495 ctgataacgtgttatgaaataaactaaaagcactagatcaaagaagaggaagaagaagaaga 25278556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 24228304 - 24228356
Alignment:
Q  174 cttcacaagtgtgttttttacatggcaatgtagatcctatatataggatacaa 226  Q
    ||||||||||||||  |||||||  |||| |||||||||| ||||||||||||    
T  24228304 cttcacaagtgtgtactttacattacaatatagatcctatttataggatacaa 24228356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 11312239 - 11312188
Alignment:
Q  179 caagtgtgttttttacatggcaa-tgtagatcctatatataggatacaaaag 229  Q
    |||||||||| |||||||| ||| |||||||||||| |||||||||||||||    
T  11312239 caagtgtgttctttacatgacaaatgtagatcctatttataggatacaaaag 11312188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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