View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0438_2D_low_58 (Length: 235)
Name: NF0438_2D_low_58
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 37980031 - 37980238
Alignment:
| Q |
22 |
ttgacatctaaaaacgtaaactcctccaaatttacgagttaacactcgatttgtataacactgcttagcacaaccacaaaatcgagggggtcctaatcca |
121 |
Q |
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| T |
37980031 |
ttgacatctaaaaacgtaaattcgtccaaatttacgagttaacactcgatttgtataacattgcttagcacaaccacaaaattgagggggtcctaatcca |
37980130 |
T |
|
| Q |
122 |
aatgatgcttgttgctttgtgtatacagaggtgggaacagccgctaccaaagccaacaactgttccgtttaccttagatgattcaccatctatgtctcca |
221 |
Q |
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| T |
37980131 |
aatcatgcttgttgctttgtgtatacagaagtgggaacagccgctaccaaagccaacaactgttccctttaccttagatgattcaccatctatgtctcca |
37980230 |
T |
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| Q |
222 |
acaccaaa |
229 |
Q |
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|||||||| |
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| T |
37980231 |
acaccaaa |
37980238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 21446851 - 21446796
Alignment:
| Q |
29 |
ctaaaaacgtaaactcctccaaatttacgagttaacactcgatttgtataacactg |
84 |
Q |
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| T |
21446851 |
ctaaaaacttaaactcatccgaatttacgaattaacactcgatttgtggaacactg |
21446796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 1108389 - 1108343
Alignment:
| Q |
29 |
ctaaaaacgtaaactcctccaaatttacgagttaacactcgatttgt |
75 |
Q |
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|
| T |
1108389 |
ctaaaaacgtaaactcagacgaatttacgagttaacactcgatttgt |
1108343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 18954502 - 18954456
Alignment:
| Q |
29 |
ctaaaaacgtaaactcctccaaatttacgagttaacactcgatttgt |
75 |
Q |
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| T |
18954502 |
ctaaaaacgtaaactcgggcgaatttacgagttaacactcgatttgt |
18954456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 22479826 - 22479783
Alignment:
| Q |
29 |
ctaaaaacgtaaactcctccaaatttacgagttaacactcgatt |
72 |
Q |
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| T |
22479826 |
ctaaaaacgtaaactcatccaaatttacgagttaacactcgatt |
22479783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 8563442 - 8563491
Alignment:
| Q |
26 |
catctaaaaacgtaaactcctccaaatttacgagttaacactcgatttgt |
75 |
Q |
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||||||||||||||||||| | | | ||||| |||||||||||||||||| |
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| T |
8563442 |
catctaaaaacgtaaactcgtgcgagtttacaagttaacactcgatttgt |
8563491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 12877702 - 12877658
Alignment:
| Q |
29 |
ctaaaaacgtaaactcctccaaatttacgagttaacactcgattt |
73 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||| |
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| T |
12877702 |
ctaaaaacgtaaactcggacgaatttacgagttaacactcgattt |
12877658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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