View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0438_2D_low_6 (Length: 924)
Name: NF0438_2D_low_6
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0438_2D_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 712; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 159 - 910
Target Start/End: Original strand, 9462044 - 9462793
Alignment:
| Q |
159 |
gtctacacccataaccctaaagtatctaagagtttacctaaaatcaaatgattatttagtgtaaagataaatgcaaaagacaaatgtgagaaaaagtgct |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462044 |
gtctacacccataaccctaaagtatctaagagtttacctaaa-tcaaatgattatttagtgtaaagataaatgcaaaagacaaatgtgagaaaaagtgct |
9462142 |
T |
|
| Q |
259 |
ctaatgataaccttttcaacctaaggtatgtgtttgtcatataatgaaaaaacaaagaagaaaaaccaaattaatttgagacatgcatcagtttagtcat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462143 |
ctaatgataaccttttcaacctaaggtatgtgtttgtcatgtaatgaataaacaaagaagaaaa-ccaaattaatttgagacatgcatcagtttagtcat |
9462241 |
T |
|
| Q |
359 |
acttagttgtttgccacaaaccttccatcacaagcaaatgataatataaaaaagacagttcatgaaaaggaaaattgaagctactataccttaaactgcg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462242 |
acttagttgtttgccacaaaccttccatcacaagcaaatgataatataaaaaagacagttcatgaaaaggaaaattgaagctactataccttaaactgcg |
9462341 |
T |
|
| Q |
459 |
ataaaagaccttgagccattgccttcattcatgtggttattaataatgttttcttctgctttgtgattcttgagatcaatatctggatgaattttcctct |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462342 |
ataaaagaccttgagccattgccttcattcatgtggttattaataatgttttcttctgctttgtgattcttgagatcaatatctggatgaattttcctct |
9462441 |
T |
|
| Q |
559 |
ttagcatcttcttcatcagctacaacattacaaatcagttaaacctaaccaattaatttcaagcaaataattaattaatggcatagttcaaattcaacat |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462442 |
ttagcatcttcttcatcagctacaacattacaaatcagttaaacctaaccaattaatttcaagcaaataattaattaatggcatagttcaaattcaacat |
9462541 |
T |
|
| Q |
659 |
tcaacactatcatatctacaaaagtctcatcactgatcaaactatgaaacactgacacagacacgacattgacaccattgtaaaaatggaagttaatgaa |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462542 |
tcaacactatcatatctacaaaagtctcatcactaatcaaactatgaaacactgacacagacacgacattgacaccattgtaaaaatggaagttaatgaa |
9462641 |
T |
|
| Q |
759 |
tgtaattacacgtgtgagtgttgtgtcagacaatagatatgtcttcggtgtcaatgttgcatagcttccttaacaagggaaataatctttaactacatat |
858 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462642 |
cgtaattacacgtgtgagtgtcgtgtcagacaatagacatgtcttcggtgtcaatgttgcatagcttccttaacaagggaaataatctttaactacatat |
9462741 |
T |
|
| Q |
859 |
atagcatttaggaagtgcatgatttagtagtagaacttactttcttgatgtc |
910 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9462742 |
atagcatttaggaagtgcatgatttagtagtagaacttactttcttgatgtc |
9462793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 9461886 - 9461993
Alignment:
| Q |
1 |
atctatttatcgtaaacacataaggaaaataaaattaagatgaacacttaagtatcctgaagtttagttggatatgtatctatttgactatcattcaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9461886 |
atctatttatcgtaaacacataaggaagataaaattaagatgaacatttaagtatcctgaagtttaattggatatgtatctatttgactatcattcaata |
9461985 |
T |
|
| Q |
101 |
tcgtatga |
108 |
Q |
| |
|
|| ||||| |
|
|
| T |
9461986 |
tcatatga |
9461993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 733
Target Start/End: Complemental strand, 10335804 - 10335771
Alignment:
| Q |
700 |
ctatgaaacactgacacagacacgacattgacac |
733 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
10335804 |
ctatgaaacactgacacagacacgacagtgacac |
10335771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 700 - 733
Target Start/End: Complemental strand, 33523486 - 33523453
Alignment:
| Q |
700 |
ctatgaaacactgacacagacacgacattgacac |
733 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
33523486 |
ctataaaacactgacacagacacgacattgacac |
33523453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 148 times since January 2019
Visitors: 3259