View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_2D_low_66 (Length: 216)

Name: NF0438_2D_low_66
Description: NF0438_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_2D_low_66
NF0438_2D_low_66
[»] chr5 (5 HSPs)
chr5 (5-169)||(24651057-24651221)
chr5 (26-118)||(24791761-24791853)
chr5 (116-164)||(18175239-18175287)
chr5 (114-165)||(27278768-27278819)
chr5 (114-165)||(33729808-33729859)
[»] scaffold0166 (1 HSPs)
scaffold0166 (26-118)||(34144-34236)
[»] chr3 (6 HSPs)
chr3 (114-165)||(49019213-49019264)
chr3 (114-165)||(43566810-43566861)
chr3 (114-164)||(4478383-4478433)
chr3 (116-165)||(20221466-20221515)
chr3 (4-32)||(19112757-19112785)
chr3 (3-31)||(33372760-33372788)
[»] chr4 (4 HSPs)
chr4 (114-165)||(11872903-11872954)
chr4 (114-165)||(22158277-22158328)
chr4 (129-162)||(25259493-25259526)
chr4 (113-165)||(47416497-47416549)
[»] chr1 (4 HSPs)
chr1 (118-165)||(3569078-3569125)
chr1 (116-159)||(51718166-51718209)
chr1 (114-164)||(49916470-49916520)
chr1 (124-164)||(44746284-44746324)
[»] chr7 (3 HSPs)
chr7 (1-31)||(20459044-20459074)
chr7 (128-165)||(21461666-21461703)
chr7 (1-38)||(48672264-48672301)
[»] chr6 (1 HSPs)
chr6 (1-31)||(18500683-18500713)


Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 24651057 - 24651221
Alignment:
Q  5 gacgaaaagaggtatttaccctattttcttttgtactaactattggtagtttgtagcacagcacaacttcacaatttcttttctcctaaatcaaaatttg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||| |||||||||||||| ||    
T  24651057 gacgaaaagaggtatttaccctattttcttttgtactaactattgatagtttggagcccagcacagcttcacaatttcttttatcctaaatcaaaatgtg 24651156  T
Q  105 attcttctgattattatacgtaggggtcggggttcgaatctcagacatcctacttattcacattg 169  Q
    |||||||||||||||||| |||||||| ||||||||||  |||||||||| ||||||||||||||    
T  24651157 attcttctgattattatatgtaggggttggggttcgaacttcagacatcccacttattcacattg 24651221  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 24791761 - 24791853
Alignment:
Q  26 tattttcttttgtactaactattggtagtttgtagcacagcacaacttcacaatttcttttctcctaaatcaaaatttgattcttctgattat 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  24791761 tattttcttttgtagtaactattggtagtttgtagcacagcacaacttcacactttcttttgtcctaaatcaaaatgtgattcttctgattat 24791853  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 18175239 - 18175287
Alignment:
Q  116 tattatacgtaggggtcggggttcgaatctcagacatcctacttattca 164  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||    
T  18175239 tattatatgtaggggtcggggttcgaaccccagacatcccacttattca 18175287  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 27278819 - 27278768
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||||| ||||||||||||||||||| |||||||| || | ||||||||    
T  27278819 attattatatgtaggggtcggggttcgaacctcagacaccccatttattcac 27278768  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 33729808 - 33729859
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||||| | ||||| |||||||||||||||||||| || ||||||||||    
T  33729808 attattatatgcaggggccggggttcgaatctcagacaccccacttattcac 33729859  T

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Target: scaffold0166 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 34144 - 34236
Alignment:
Q  26 tattttcttttgtactaactattggtagtttgtagcacagcacaacttcacaatttcttttctcctaaatcaaaatttgattcttctgattat 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  34144 tattttcttttgtagtaactattggtagtttgtagcacagcacaacttcacactttcttttgtcctaaatcaaaatgtgattcttctgattat 34236  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 49019213 - 49019264
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||||| |||||||||||||||||||||||||||| |  ||||||||||    
T  49019213 attattatatgtaggggtcggggttcgaatctcagacaccgcacttattcac 49019264  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Complemental strand, 43566861 - 43566810
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||||| | ||||||||||||||||| |||||||| || ||||||||||    
T  43566861 attattatatgcaggggtcggggttcgaacctcagacaccccacttattcac 43566810  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 4478433 - 4478383
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattca 164  Q
    ||||||||| | ||||||||||||||||||| | ||||||| |||||||||    
T  4478433 attattatatgcaggggtcggggttcgaatcccggacatcccacttattca 4478383  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 20221466 - 20221515
Alignment:
Q  116 tattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||| ||||||||||| ||||||| ||| ||||||| ||||||||||    
T  20221466 tattatatgtaggggtcggtgttcgaacctcggacatcccacttattcac 20221515  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 19112785 - 19112757
Alignment:
Q  4 ggacgaaaagaggtatttaccctattttc 32  Q
    |||||||||||||||||||||||||||||    
T  19112785 ggacgaaaagaggtatttaccctattttc 19112757  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 33372760 - 33372788
Alignment:
Q  3 gggacgaaaagaggtatttaccctatttt 31  Q
    |||||||||||||||||||||||||||||    
T  33372760 gggacgaaaagaggtatttaccctatttt 33372788  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 11872903 - 11872954
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||||| ||||||||||| ||||||| | | ||||||||||||||||||    
T  11872903 attattatatgtaggggtcggagttcgaaccccggacatcctacttattcac 11872954  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 165
Target Start/End: Original strand, 22158277 - 22158328
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||||| | ||||||||||||||||| ||| ||||||| ||||||||||    
T  22158277 attattatatgcaggggtcggggttcgaaactcggacatccaacttattcac 22158328  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 162
Target Start/End: Original strand, 25259493 - 25259526
Alignment:
Q  129 ggtcggggttcgaatctcagacatcctacttatt 162  Q
    |||||||||||||||||||||| |||||||||||    
T  25259493 ggtcggggttcgaatctcagacttcctacttatt 25259526  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 47416497 - 47416549
Alignment:
Q  113 gattattatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    |||||||||| | |||||| |||||||||||||| |||| || ||||||||||    
T  47416497 gattattatatgcaggggttggggttcgaatctcggacaccccacttattcac 47416549  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 3569078 - 3569125
Alignment:
Q  118 ttatacgtaggggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||| ||||||||| |||||||||| |||||||||||| ||||||||    
T  3569078 ttatatgtaggggtcagggttcgaatttcagacatcctatttattcac 3569125  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 51718166 - 51718209
Alignment:
Q  116 tattatacgtaggggtcggggttcgaatctcagacatcctactt 159  Q
    ||||||| |||||||| |||||||||||||||||||||| ||||    
T  51718166 tattatatgtaggggttggggttcgaatctcagacatcccactt 51718209  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 49916470 - 49916520
Alignment:
Q  114 attattatacgtaggggtcggggttcgaatctcagacatcctacttattca 164  Q
    ||||||||| ||||||||||||||||||||| | ||||||| | |||||||    
T  49916470 attattatatgtaggggtcggggttcgaatcccggacatcccatttattca 49916520  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 44746284 - 44746324
Alignment:
Q  124 gtaggggtcggggttcgaatctcagacatcctacttattca 164  Q
    ||||||||||| ||||||| |||||| ||||||||||||||    
T  44746284 gtaggggtcggtgttcgaacctcagatatcctacttattca 44746324  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 20459044 - 20459074
Alignment:
Q  1 cagggacgaaaagaggtatttaccctatttt 31  Q
    |||||||||||||||||||||||||||||||    
T  20459044 cagggacgaaaagaggtatttaccctatttt 20459074  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 21461703 - 21461666
Alignment:
Q  128 gggtcggggttcgaatctcagacatcctacttattcac 165  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  21461703 gggtcggggttcgaatctcggacatcccacttattcac 21461666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 48672301 - 48672264
Alignment:
Q  1 cagggacgaaaagaggtatttaccctattttcttttgt 38  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  48672301 cagggacgaaaagaggtatttaccctaatttctattgt 48672264  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 18500683 - 18500713
Alignment:
Q  1 cagggacgaaaagaggtatttaccctatttt 31  Q
    |||||||||||||||||||||||||||||||    
T  18500683 cagggacgaaaagaggtatttaccctatttt 18500713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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