View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0438_low_1 (Length: 582)

Name: NF0438_low_1
Description: NF0438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0438_low_1
NF0438_low_1
[»] chr7 (23 HSPs)
chr7 (252-514)||(4647476-4647738)
chr7 (72-230)||(4647335-4647493)
chr7 (281-401)||(4666917-4667039)
chr7 (264-395)||(4712075-4712208)
chr7 (264-401)||(4846009-4846148)
chr7 (265-399)||(4783831-4783967)
chr7 (265-399)||(4816260-4816396)
chr7 (265-399)||(4636820-4636956)
chr7 (345-401)||(4643714-4643772)
chr7 (345-401)||(4863965-4864023)
chr7 (121-179)||(4630780-4630838)
chr7 (258-381)||(4653476-4653601)
chr7 (346-401)||(4630971-4631028)
chr7 (147-181)||(4846225-4846259)
chr7 (145-181)||(4636714-4636750)
chr7 (145-181)||(4661649-4661685)
chr7 (145-181)||(4666786-4666822)
chr7 (121-181)||(4672527-4672587)
chr7 (345-401)||(4697184-4697242)
chr7 (346-401)||(4672720-4672777)
chr7 (136-177)||(4653375-4653416)
chr7 (145-181)||(4643522-4643558)
chr7 (145-177)||(4697398-4697430)
[»] chr4 (1 HSPs)
chr4 (264-401)||(18925736-18925875)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 252 - 514
Target Start/End: Original strand, 4647476 - 4647738
Alignment:
Q  252 accagcccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaac 351  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4647476 accagcccatgcaatcacatcagcataatgttcagccaaaatatcatctataaacatatgaaaaactgtatcacctgaattctttatatgtcaatcaaac 4647575  T
Q  352 tcacaaaagtaaccttaccatataagtaaaaccagaatcaacttcaaaataagttgatggacaggatagatagagtgaaaaaagagaaaactttgaaagc 451  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4647576 tcacaaaagtaaccttaccatataagtaaaaccagaatcaacttcaaaataagttgatggacaggatagatagagtgaaaaaagagaaaactttgaaaac 4647675  T
Q  452 taattcttaatacatttctactcatttcaccattactaatttgacacattgcctttactttct 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4647676 taattcttaatacatttctactcatttcaccattactaatttgacacattgcctttactttct 4647738  T

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Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 4647493 - 4647335
Alignment:
Q  72 gtgattgcatgggctggtgctcactgtcaataaggattgtgcttgttcatatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaat 171  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4647493 gtgattgcatgggctggtgctccctgtcaataaggattgtgcttgttcatatgtactctcaaggaggaaggaatcaaattgaaagagttaatctttcaat 4647394  T
Q  172 caagcttcaatgactattccaaaattaatatcatgcgcggaggatatgtccgtctggag 230  Q
    |||||||||| || |||||||||||| |||||||||| | |||||||||||||||||||    
T  4647393 caagcttcaacgattattccaaaattgatatcatgcgggaaggatatgtccgtctggag 4647335  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 281 - 401
Target Start/End: Original strand, 4666917 - 4667039
Alignment:
Q  281 gttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gtaaccttaccatataagt 378  Q
    ||||| ||| ||||||||||||||| || ||||||||| ||||||||| |||||| ||||| |||||||||||||||||  | |||||||||||||||||    
T  4666917 gttcagccataatatcatctataaaaatctgaaaaactctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagt 4667016  T
Q  379 aaaaccagaatcaacttcaaaat 401  Q
    ||||  ||||||||||| |||||    
T  4667017 aaaaatagaatcaactttaaaat 4667039  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 4712208 - 4712075
Alignment:
Q  264 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 361  Q
    |||||||||||| ||||||||| ||||||||||||  ||||| || ||||||||| ||||||||  |||||| ||| |   |||||||||||||||  ||    
T  4712208 aatcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgt 4712109  T
Q  362 aaccttaccatataagtaaaaccagaatcaactt 395  Q
    |||||||||||||||||||||| |||||||||||    
T  4712108 aaccttaccatataagtaaaactagaatcaactt 4712075  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 264 - 401
Target Start/End: Complemental strand, 4846148 - 4846009
Alignment:
Q  264 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 361  Q
    |||||||||||||||| ||||| ||||||||||||  ||||| || ||||||||| ||||||||  ||||||  || |   |||||||||||||||  ||    
T  4846148 aatcacatcagcatatagttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttggtaagcagatcaaactcacaaaaatgt 4846049  T
Q  362 aaccttaccatataagtaaaaccagaatcaacttcaaaat 401  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  4846048 aaccttaccatataagtaaaactagaatcaacttcgaaat 4846009  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 4783967 - 4783831
Alignment:
Q  265 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 362  Q
    ||||||||||||   |||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4783967 atcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4783868  T
Q  363 accttaccatataagtaaaaccagaatcaacttcaaa 399  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4783867 accttaccatataagtaaaagcagaatcaacttcaaa 4783831  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 399
Target Start/End: Complemental strand, 4816396 - 4816260
Alignment:
Q  265 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 362  Q
    |||||||||||| |  ||||| ||||| |||||||||| || || ||||||| | |||||||  | |  || ||||| |||||||||||||||||  |||    
T  4816396 atcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatgccaatcaaactcacaaaaatgta 4816297  T
Q  363 accttaccatataagtaaaaccagaatcaacttcaaa 399  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4816296 accttaccatataagtaaaagcagaatcaacttcaaa 4816260  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 399
Target Start/End: Original strand, 4636820 - 4636956
Alignment:
Q  265 atcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gta 362  Q
    |||||||| || | || |||||||||| | | |||||| || || ||||| ||| ||||||||  ||  || ||||| |||||||||||||||||  |||    
T  4636820 atcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatagttgatatgccaatcaaactcacaaaaatgta 4636919  T
Q  363 accttaccatataagtaaaaccagaatcaacttcaaa 399  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4636920 accttaccatataagtaaaagcagaatcaacttcaaa 4636956  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 4643714 - 4643772
Alignment:
Q  345 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 401  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||    
T  4643714 atcaaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaat 4643772  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 401
Target Start/End: Original strand, 4863965 - 4864023
Alignment:
Q  345 atcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 401  Q
    |||||||||||||||  |||||||||||||||||||||||  |||||||||||||||||    
T  4863965 atcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaat 4864023  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 4630838 - 4630780
Alignment:
Q  121 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttc 179  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||||||||||||||    
T  4630838 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttcaatcaagcttc 4630780  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 258 - 381
Target Start/End: Original strand, 4653476 - 4653601
Alignment:
Q  258 ccatgcaatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaa 357  Q
    ||||| |||||||||||||| | ||||| |||| | ||||| |||||| || || |||||| ||||||||  || ||| ||| | |||||||| ||||||    
T  4653476 ccatgaaatcacatcagcatttggttcagccaagaaatcatgtataaatatctggaaaactctatcacctttatccttgatacgccaatcaaattcacaa 4653575  T
Q  358 aa--gtaaccttaccatataagtaaa 381  Q
    ||  ||||||| ||||||||||||||    
T  4653576 aaatgtaacctgaccatataagtaaa 4653601  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 4630971 - 4631028
Alignment:
Q  346 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 401  Q
    ||||||||||||||  |||| ||||||||||||||||||  |||||||||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaat 4631028  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 181
Target Start/End: Original strand, 4846225 - 4846259
Alignment:
Q  147 aaattgaaagagttaatctttcaatcaagcttcaa 181  Q
    |||||||||||||||||||||||||||||||||||    
T  4846225 aaattgaaagagttaatctttcaatcaagcttcaa 4846259  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 4636750 - 4636714
Alignment:
Q  145 tcaaattgaaagagttaatctttcaatcaagcttcaa 181  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4636750 tcaaattgaaagagtttatctttcaatcaagcttcaa 4636714  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 4661685 - 4661649
Alignment:
Q  145 tcaaattgaaagagttaatctttcaatcaagcttcaa 181  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4661685 tcaaattgaaagagttgatctttcaatcaagcttcaa 4661649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 4666822 - 4666786
Alignment:
Q  145 tcaaattgaaagagttaatctttcaatcaagcttcaa 181  Q
    ||||||||||||||||||||||||||| |||||||||    
T  4666822 tcaaattgaaagagttaatctttcaattaagcttcaa 4666786  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 4672587 - 4672527
Alignment:
Q  121 tatgtactctccaggaggaaggaatcaaattgaaagagttaatctttcaatcaagcttcaa 181  Q
    ||||||||||| || ||||||   |||||||||||||||||||||||| || |||||||||    
T  4672587 tatgtactctcaagaaggaagctctcaaattgaaagagttaatctttctattaagcttcaa 4672527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 4697242 - 4697184
Alignment:
Q  345 atcaaactcacaaaagt--aaccttaccatataagtaaaaccagaatcaacttcaaaat 401  Q
    ||||||||||||||| |  ||||||||||||||||||||||||  ||||||||| ||||    
T  4697242 atcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaat 4697184  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 4672720 - 4672777
Alignment:
Q  346 tcaaactcacaaaa--gtaaccttaccatataagtaaaaccagaatcaacttcaaaat 401  Q
    ||||||||||||||  ||||||||||||||||||| |||  ||||||||| |||||||    
T  4672720 tcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaaaat 4672777  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 4653416 - 4653375
Alignment:
Q  136 aggaaggaatcaaattgaaagagttaatctttcaatcaagct 177  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  4653416 aggaagcactcaaattgaaagagttaatcttacaatcaagct 4653375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 4643558 - 4643522
Alignment:
Q  145 tcaaattgaaagagttaatctttcaatcaagcttcaa 181  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  4643558 tcaacttgaaagagctaatctttcaatcaagcttcaa 4643522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 4697398 - 4697430
Alignment:
Q  145 tcaaattgaaagagttaatctttcaatcaagct 177  Q
    ||||||||||||| |||||||||||||||||||    
T  4697398 tcaaattgaaagacttaatctttcaatcaagct 4697430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 264 - 401
Target Start/End: Complemental strand, 18925875 - 18925736
Alignment:
Q  264 aatcacatcagcatattgttcaaccaaaatatcatctataaacatatgaaaaactgtatcacctgcattctttatatgtcaatcaaactcacaaaa--gt 361  Q
    |||||||||||||| | ||||| ||||| ||||||||||||| || ||||||||| ||||||||  |||||||||||| ||||||||||| |||||  |     
T  18925875 aatcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatgc 18925776  T
Q  362 aaccttaccatataagtaaaaccagaatcaacttcaaaat 401  Q
    || ||||||| |||||||||  ||||||||||||||||||    
T  18925775 aatcttaccaaataagtaaaggcagaatcaacttcaaaat 18925736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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