View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0439_high_1 (Length: 336)
Name: NF0439_high_1
Description: NF0439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0439_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 24 - 307
Target Start/End: Original strand, 887296 - 887585
Alignment:
| Q |
24 |
aacaatgtgaagtttgaattactagttaaacattatataaaactgtcggtgagcacctttttattaagctacctttgattttatgatcctctaattaagt |
123 |
Q |
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| T |
887296 |
aacaatgtgaagtttgaattacaagttgaacattatataaccctctcggtgagcacctttttgtgaagctacctttgattttatgatcctctaattaagt |
887395 |
T |
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| Q |
124 |
aattatattctaacatgctagctatatatccttaattttcagagtagaggaaatatatgcttgctaatcgaa------actgactttgatgatgatgata |
217 |
Q |
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| T |
887396 |
aattatatactaacatgctagctatatatccttaattttcagagaaaaggaaatatatgcttgctattcgaagatagcaaggaaaatgactttgatgatg |
887495 |
T |
|
| Q |
218 |
ataatgtgataggaggtagtaaagaaannnnnnnnnnnnnatttgtactgattattattactttgatttgtaataacattttgttttggt |
307 |
Q |
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| T |
887496 |
ataatgtgataggaggtagtaaagaaatctttctctttttatttgtactgattattattactttgatttgtaataacattttgttttggt |
887585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 31880668 - 31880610
Alignment:
| Q |
73 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaagtaattatat |
131 |
Q |
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| T |
31880668 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaaataattatat |
31880610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 31900074 - 31900142
Alignment:
| Q |
125 |
attatattctaacatgctagctatatatccttaattttcagagtagaggaaatatatgcttgctaatcgaa |
195 |
Q |
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| T |
31900074 |
attatatactaacatgctagctatatatccttaattttcagagtaaaggaa--atatgtttgctaatcgaa |
31900142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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