View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0439_low_3 (Length: 265)

Name: NF0439_low_3
Description: NF0439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0439_low_3
NF0439_low_3
[»] chr7 (14 HSPs)
chr7 (17-223)||(4630632-4630838)
chr7 (77-222)||(4712260-4712405)
chr7 (77-216)||(4784026-4784165)
chr7 (39-216)||(4666659-4666839)
chr7 (84-223)||(4697374-4697513)
chr7 (165-223)||(4672529-4672587)
chr7 (77-207)||(4816464-4816594)
chr7 (85-202)||(4636636-4636753)
chr7 (160-226)||(4647381-4647447)
chr7 (160-219)||(4846203-4846262)
chr7 (165-223)||(4643524-4643582)
chr7 (167-223)||(4653375-4653431)
chr7 (176-218)||(4863786-4863828)
chr7 (165-202)||(4661651-4661688)
[»] chr4 (1 HSPs)
chr4 (84-223)||(18925926-18926065)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 4630632 - 4630838
Alignment:
Q  17 tgggtagataattcttgatgccggggagatagaccaatgaattttgaaatttgccctgcaagattagttttatcacttattttgaaaatctcaattccat 116  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630632 tgggttgaaaattcttgatgccggggagatagaccaatgaattttgaaatttgccctgcaagattagttttatcacttattttgaaaatctcaattccat 4630731  T
Q  117 tcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630732 tcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgaga 4630831  T
Q  217 gtacata 223  Q
    |||||||    
T  4630832 gtacata 4630838  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 4712405 - 4712260
Alignment:
Q  77 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 176  Q
    |||||| ||||||||||||||||||||||||||||||||||||  | ||||||||| ||  ||||||  ||| |||||||| ||||| ||||||| ||||    
T  4712405 agattatttttatcacttattttgaaaatctcaattccattcattatgacatcacggtaatttgtgtagatactttctggttctcgttgaagcttaattg 4712306  T
Q  177 aaagattaactctttcaatttgagagcttccttcttgagagtacat 222  Q
    |||| |||||||||||||||| ||||||||| | ||||||||||||    
T  4712305 aaaggttaactctttcaatttcagagcttccattttgagagtacat 4712260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 4784165 - 4784026
Alignment:
Q  77 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 176  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||  ||  | |||| || ||||  |||| | |||||||| |    
T  4784165 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagcttgatcg 4784066  T
Q  177 aaagattaactctttcaatttgagagcttccttcttgaga 216  Q
    ||||||||||| |||||||||||||||||||  |||||||    
T  4784065 aaagattaactttttcaatttgagagcttccgccttgaga 4784026  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 216
Target Start/End: Original strand, 4666659 - 4666839
Alignment:
Q  39 ggggagatagaccaatgaattttgaaatttgccctgcaagatt---agttttatcacttattttgaaaatctcaattccattcagcaggacatcacgata 135  Q
    ||||||||||| ||||| ||||||| ||| | ||||| |||||   | |||| ||||||||||| |||||||| |||||||| || ||||||||||  ||    
T  4666659 ggggagatagaacaatggattttgatattggtcctgcgagattgttatttttgtcacttatttttaaaatctcgattccattaagaaggacatcactgta 4666758  T
Q  136 tattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgaga 216  Q
    | ||||    | |||||||||| ||||| ||||||| |||||||||||||||||||||||||||  ||| ||| |||||||    
T  4666759 ttttgtaaagacagtttctggtactcgttgaagcttaattgaaagattaactctttcaatttgacggctccctccttgaga 4666839  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 4697513 - 4697374
Alignment:
Q  84 ttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatt 183  Q
    |||||||| ||||||| |||||||| || |||||||    ||||||||  ||| |||||   |||  | ||||||||||| | |||||||||||||||||    
T  4697513 ttttatcatttattttcaaaatctcgatgccattcaatgtgacatcaccgtatcttgtgaagatacgtcctggtgctcgttgtagcttgattgaaagatt 4697414  T
Q  184 aactctttcaatttgagagcttccttcttgagagtacata 223  Q
    || |||||||||||||||||||||||||||||||| ||||    
T  4697413 aagtctttcaatttgagagcttccttcttgagagtgcata 4697374  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 4672529 - 4672587
Alignment:
Q  165 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 223  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4672529 gaagcttaatagaaagattaactctttcaatttgagagcttccttcttgagagtacata 4672587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 4816594 - 4816464
Alignment:
Q  77 agattagttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattg 176  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |  ||||||||||||||  |   | |||| || ||||  |||  | |||||||| |    
T  4816594 agattatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagcttgatcg 4816495  T
Q  177 aaagattaactctttcaatttgagagcttcc 207  Q
    ||||||||||| |||||||||||||||||||    
T  4816494 aaagattaactttttcaatttgagagcttcc 4816464  T

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Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 202
Target Start/End: Original strand, 4636636 - 4636753
Alignment:
Q  85 tttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatta 184  Q
    ||||||||| |||||||||||||| |||||||| || |  ||||||||||||| |||  | || | || ||||  |||| |||||||||||||||||| |    
T  4636636 tttatcactaattttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaaagataa 4636735  T
Q  185 actctttcaatttgagag 202  Q
    ||||||||||||||||||    
T  4636736 actctttcaatttgagag 4636753  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 4647381 - 4647447
Alignment:
Q  160 tcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacatatga 226  Q
    |||| |||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||    
T  4647381 tcgttgaagcttgattgaaagattaactctttcaatttgattccttcctccttgagagtacatatga 4647447  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 4846262 - 4846203
Alignment:
Q  160 tcgtcgaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagta 219  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  4846262 tcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagta 4846203  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 4643524 - 4643582
Alignment:
Q  165 gaagcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 223  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||    
T  4643524 gaagcttgattgaaagattagctctttcaagttgagagcttccttcttgatagtccata 4643582  T

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Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 4653375 - 4653431
Alignment:
Q  167 agcttgattgaaagattaactctttcaatttgagagcttccttcttgagagtacata 223  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  4653375 agcttgattgtaagattaactctttcaatttgagtgcttccttcttcagagtgcata 4653431  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 4863786 - 4863828
Alignment:
Q  176 gaaagattaactctttcaatttgagagcttccttcttgagagt 218  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  4863786 gaaaggttaactctttcaatttgagagcttccttcttcagagt 4863828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 4661651 - 4661688
Alignment:
Q  165 gaagcttgattgaaagattaactctttcaatttgagag 202  Q
    |||||||||||||||||| |||||||||||||||||||    
T  4661651 gaagcttgattgaaagatcaactctttcaatttgagag 4661688  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 18926065 - 18925926
Alignment:
Q  84 ttttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatt 183  Q
    |||| ||||||||||| |||||||| || |||||||    ||||| ||| ||| ||| ||  ||| |||||||||||||| | ||||| |||||||||||    
T  18926065 ttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttgagtagatattttctggtgctcgttgtagctttattgaaagatt 18925966  T
Q  184 aactctttcaatttgagagcttccttcttgagagtacata 223  Q
    |||||||| |||||| |||||||||||| |||||||||||    
T  18925965 aactcttttaatttgcgagcttccttctcgagagtacata 18925926  T

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