View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-3-1-Insertion-2 (Length: 315)
Name: NF0440-3-1-Insertion-2
Description: 454-NF0440-3-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-3-1-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 263402 - 263083
Alignment:
| Q |
6 |
aatatgacggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatag |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
263402 |
aatatggcggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatag |
263303 |
T |
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| Q |
106 |
ttttagttggtgaataataaggtgaattatttggaacatgagtgattta----------ccgtggaaattagatttgaagatactggtcaatactcacaa |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
263302 |
ttttagttggtgaataataaggtgaattatttggaacatgagtgatttagcgcattcccccgtggaaattagatttgaagatactggtcaatactcacaa |
263203 |
T |
|
| Q |
196 |
acttggtttagcacttatttcaattctatggattaactcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
263202 |
acttggtttagcacttatttcaattctatggattaactcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtct |
263103 |
T |
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| Q |
296 |
gtattatatacacatgagta |
315 |
Q |
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|||||||||||||||||||| |
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| T |
263102 |
gtattatatacacatgagta |
263083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 652519 - 652838
Alignment:
| Q |
6 |
aatatgacggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatag |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
652519 |
aatatggcggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatag |
652618 |
T |
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| Q |
106 |
ttttagttggtgaataataaggtgaattatttggaacatgagtgattta----------ccgtggaaattagatttgaagatactggtcaatactcacaa |
195 |
Q |
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| T |
652619 |
ttttagttggtgaataataaggtgaattatttggaacatgagtgatttagcgcattcccccgtggaaattagatttgaagatactggtcaatactcacaa |
652718 |
T |
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| Q |
196 |
acttggtttagcacttatttcaattctatggattaactcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
652719 |
acttggtttagcacttatttcaattctatggattaactcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtct |
652818 |
T |
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| Q |
296 |
gtattatatacacatgagta |
315 |
Q |
| |
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|||||||||||||||||||| |
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| T |
652819 |
gtattatatacacatgagta |
652838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 838254 - 838573
Alignment:
| Q |
6 |
aatatgacggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatag |
105 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
838254 |
aatatggcggaaaatgaagagattgaggtaaatggtaatgttggaaatattgaaacaagaacacttaaagaggaacacattaagggtgaataataaatag |
838353 |
T |
|
| Q |
106 |
ttttagttggtgaataataaggtgaattatttggaacatgagtgattta----------ccgtggaaattagatttgaagatactggtcaatactcacaa |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
838354 |
ttttagttggtgaataataaggtgaattatttggaacatgagtgatttagcgcattcccccgtggaaattagatttgaagatactggtcaatactcacaa |
838453 |
T |
|
| Q |
196 |
acttggtttagcacttatttcaattctatggattaactcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtct |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
838454 |
acttggtttagcacttatttcaattctatggattaactcttaggctttcccaaaaatatggctaactagacttaacctaaagttgttttctacggtgtct |
838553 |
T |
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| Q |
296 |
gtattatatacacatgagta |
315 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
838554 |
gtattatatacacatgagta |
838573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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