View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-3-1-Insertion-6 (Length: 123)

Name: NF0440-3-1-Insertion-6
Description: 454-NF0440-3-1
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-3-1-Insertion-6
NF0440-3-1-Insertion-6
[»] chr3 (3 HSPs)
chr3 (30-123)||(42209671-42209764)
chr3 (36-123)||(42221922-42222009)
chr3 (61-123)||(42191070-42191132)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 42209764 - 42209671
Alignment:
Q  30 tgtatgtatagctatctaatattgaggtgacatgtttcagaatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttggga 123  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||    
T  42209764 tgtatatatagctatctaatattggggtgacatgtttcagaatatggtttaggaggcaaggcttcaactagtggtgatgtgtacagttttggga 42209671  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 42222009 - 42221922
Alignment:
Q  36 tatagctatctaatattgaggtgacatgtttcagaatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttggga 123  Q
    ||||||||||||||| || |||  ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  42222009 tatagctatctaatactggggtaccatgtttcagaatatggtctaggaggcaaggcttcaactagtggtgatgtgtacagttttggga 42221922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 42191132 - 42191070
Alignment:
Q  61 atgtttcagaatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttggga 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42191132 atgtttcagaatatggtctaggtggaaaggcttcaactagtggtgatgtgtacagttttggga 42191070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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