View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-8F-Insertion-1 (Length: 940)

Name: NF0440-8F-Insertion-1
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-8F-Insertion-1
NF0440-8F-Insertion-1
[»] chr3 (22 HSPs)
chr3 (672-906)||(45455690-45455919)
chr3 (110-345)||(45458536-45458757)
chr3 (8-72)||(45458795-45458859)
chr3 (346-452)||(12518561-12518668)
chr3 (567-637)||(47100114-47100184)
chr3 (578-638)||(25644881-25644941)
chr3 (582-634)||(50769955-50770007)
chr3 (578-637)||(43615981-43616040)
chr3 (571-637)||(2455942-2456008)
chr3 (571-637)||(19466133-19466199)
chr3 (568-637)||(4221355-4221424)
chr3 (567-636)||(27813746-27813815)
chr3 (578-638)||(47648995-47649055)
chr3 (599-638)||(145515-145554)
chr3 (346-389)||(25644577-25644620)
chr3 (571-609)||(20362184-20362222)
chr3 (599-637)||(20383498-20383536)
chr3 (347-389)||(42641953-42641995)
chr3 (567-629)||(44462460-44462521)
chr3 (315-345)||(52126885-52126915)
chr3 (599-632)||(19560237-19560270)
chr3 (310-343)||(29129125-29129158)
[»] chr5 (19 HSPs)
chr5 (691-906)||(40165337-40165547)
chr5 (567-638)||(24441800-24441871)
chr5 (567-638)||(4819832-4819903)
chr5 (567-637)||(43541205-43541275)
chr5 (578-639)||(19645458-19645519)
chr5 (571-639)||(4428672-4428740)
chr5 (578-637)||(16717205-16717264)
chr5 (599-638)||(16633625-16633664)
chr5 (570-637)||(24535341-24535408)
chr5 (582-637)||(37022786-37022841)
chr5 (569-634)||(17549405-17549468)
chr5 (581-638)||(2866763-2866820)
chr5 (578-637)||(2985698-2985757)
chr5 (314-345)||(4077837-4077868)
chr5 (582-637)||(20645585-20645640)
chr5 (578-637)||(32274980-32275039)
chr5 (567-637)||(31736623-31736693)
chr5 (571-637)||(32487255-32487321)
chr5 (315-344)||(30463750-30463779)
[»] chr1 (25 HSPs)
chr1 (386-493)||(49915616-49915726)
chr1 (571-637)||(3712791-3712857)
chr1 (580-637)||(25244867-25244924)
chr1 (581-638)||(47476556-47476613)
chr1 (567-637)||(39864714-39864784)
chr1 (558-638)||(49915778-49915856)
chr1 (567-634)||(52764682-52764749)
chr1 (567-637)||(36565575-36565644)
chr1 (571-636)||(4198498-4198563)
chr1 (672-713)||(6922175-6922216)
chr1 (672-713)||(38237662-38237703)
chr1 (580-635)||(28702233-28702288)
chr1 (578-637)||(50432576-50432635)
chr1 (578-639)||(52453675-52453736)
chr1 (582-634)||(47828029-47828081)
chr1 (599-638)||(14876783-14876822)
chr1 (582-637)||(16632109-16632164)
chr1 (579-634)||(29663840-29663895)
chr1 (599-637)||(10778469-10778507)
chr1 (314-344)||(39076265-39076295)
chr1 (315-345)||(40981636-40981666)
chr1 (580-620)||(2537077-2537118)
chr1 (346-400)||(3712508-3712564)
chr1 (578-639)||(49289944-49290005)
chr1 (312-345)||(50290430-50290463)
[»] chr6 (8 HSPs)
chr6 (571-637)||(30590215-30590281)
chr6 (567-637)||(34884301-34884372)
chr6 (567-638)||(3419204-3419275)
chr6 (346-389)||(3418990-3419033)
chr6 (578-637)||(10172696-10172757)
chr6 (578-637)||(26229449-26229508)
chr6 (581-637)||(33582820-33582876)
chr6 (578-637)||(2753680-2753739)
[»] chr7 (24 HSPs)
chr7 (567-637)||(30682584-30682654)
chr7 (569-641)||(14784624-14784697)
chr7 (567-637)||(17756863-17756934)
chr7 (567-638)||(18774797-18774868)
chr7 (578-637)||(19362705-19362764)
chr7 (567-637)||(1075779-1075849)
chr7 (567-637)||(36724186-36724255)
chr7 (346-389)||(1076097-1076140)
chr7 (578-637)||(12467574-12467633)
chr7 (569-634)||(15234665-15234728)
chr7 (567-637)||(21524659-21524729)
chr7 (568-634)||(23328942-23329008)
chr7 (578-634)||(12640304-12640360)
chr7 (578-637)||(12820372-12820431)
chr7 (578-637)||(21267836-21267895)
chr7 (346-389)||(21809325-21809368)
chr7 (582-637)||(26954262-26954317)
chr7 (578-637)||(31642893-31642952)
chr7 (578-637)||(40954851-40954910)
chr7 (314-344)||(13761780-13761810)
chr7 (601-631)||(25790847-25790877)
chr7 (344-389)||(43080202-43080247)
chr7 (598-635)||(44598694-44598731)
chr7 (568-637)||(44629502-44629571)
[»] scaffold0015 (1 HSPs)
scaffold0015 (567-637)||(64720-64790)
[»] chr8 (14 HSPs)
chr8 (567-637)||(35958799-35958869)
chr8 (571-637)||(10616842-10616908)
chr8 (578-636)||(24887989-24888047)
chr8 (599-637)||(24915664-24915702)
chr8 (567-637)||(39580590-39580660)
chr8 (581-638)||(27084262-27084319)
chr8 (312-345)||(38681134-38681167)
chr8 (578-637)||(8643254-8643313)
chr8 (599-638)||(34628442-34628481)
chr8 (599-637)||(46960-46998)
chr8 (582-637)||(19922231-19922288)
chr8 (567-613)||(42446707-42446753)
chr8 (582-635)||(16779213-16779265)
chr8 (598-639)||(24643623-24643664)
[»] chr4 (31 HSPs)
chr4 (567-637)||(14968136-14968206)
chr4 (567-637)||(29132907-29132977)
chr4 (567-638)||(22910776-22910847)
chr4 (567-638)||(22967675-22967746)
chr4 (567-628)||(5232291-5232352)
chr4 (571-636)||(19090449-19090514)
chr4 (578-637)||(27993623-27993682)
chr4 (571-637)||(55406473-55406539)
chr4 (567-638)||(9456946-9457017)
chr4 (346-389)||(35187646-35187689)
chr4 (567-637)||(45071297-45071368)
chr4 (599-634)||(46851865-46851900)
chr4 (315-345)||(14210461-14210491)
chr4 (315-345)||(14211430-14211460)
chr4 (315-345)||(14212381-14212411)
chr4 (315-345)||(14213350-14213380)
chr4 (315-345)||(14214318-14214348)
chr4 (315-345)||(14215287-14215317)
chr4 (315-345)||(14218158-14218188)
chr4 (315-345)||(14219128-14219158)
chr4 (315-345)||(14220097-14220127)
chr4 (315-345)||(14221048-14221078)
chr4 (315-345)||(14222017-14222047)
chr4 (315-345)||(14222986-14223016)
chr4 (571-637)||(26494710-26494776)
chr4 (578-640)||(49497679-49497741)
chr4 (599-637)||(50070209-50070247)
chr4 (599-637)||(50720129-50720167)
chr4 (315-344)||(1678492-1678521)
chr4 (348-389)||(8823621-8823662)
chr4 (315-344)||(14586881-14586910)
[»] chr2 (10 HSPs)
chr2 (567-637)||(13764871-13764941)
chr2 (407-488)||(28681637-28681719)
chr2 (582-634)||(26823150-26823202)
chr2 (578-637)||(4580554-4580613)
chr2 (578-637)||(43822599-43822658)
chr2 (840-906)||(7827074-7827137)
chr2 (581-638)||(40934652-40934709)
chr2 (314-345)||(26449092-26449123)
chr2 (686-736)||(7827154-7827204)
chr2 (581-635)||(12921021-12921075)
[»] scaffold0006 (1 HSPs)
scaffold0006 (582-637)||(230594-230649)
[»] scaffold0001 (2 HSPs)
scaffold0001 (346-389)||(181481-181524)
scaffold0001 (579-637)||(181792-181850)
[»] scaffold0009 (1 HSPs)
scaffold0009 (591-630)||(24166-24204)
[»] scaffold0542 (1 HSPs)
scaffold0542 (578-612)||(9704-9738)
[»] scaffold0005 (1 HSPs)
scaffold0005 (315-344)||(230464-230493)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 1e-83; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 672 - 906
Target Start/End: Complemental strand, 45455919 - 45455690
Alignment:
Q  672 actctgacacatgcctattccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcnnnnnnnttaaaat 771  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  45455919 actctgacataggccaattccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcaaaaaaattaaaat 45455820  T
Q  772 aaagttgggaaatttgggatgcttaggctgagagaaattgtttttcttgggttcatgtatatatttcttattagttttatttgtcttcccttggaatcct 871  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45455819 aaagtt-ggaaacttgggatgcttaggctgagagaaattgtttttctt-ggttcatgtatatatttcttattagttttatttgtcttccctt-gaatcct 45455723  T
Q  872 ctccaaactttgcctttctttttccttctgtgtgt 906  Q
    |||||||||||||| |||||||| |||||||||||    
T  45455722 ctccaaactttgcc-ttcttttt-cttctgtgtgt 45455690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 110 - 345
Target Start/End: Complemental strand, 45458757 - 45458536
Alignment:
Q  110 gcaagagtcatgtaattacaattcaattgttagttgcaagaacaataacatgcaagggtcggtgttcaaacatcgaaatccacacttcttccctctcaag 209  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45458757 gcaagagtcatgtaatttcaactcaattgttagttgcaagaacaatgacatgcaagggtcggtgttcaaacatcgaaatccacacttctcccctctcaag 45458658  T
Q  210 gcgtgtcaggtcaaccattagttacttgacnnnnnnnntaaaatgataaatttatttgggtctcatcaaatttatacaggacgtacattttttagcgaga 309  Q
    ||||||||||||||||||||| ||||||||         ||||  | ||| | ||         |||||||||||| |||||||||||||||||||||||    
T  45458657 gcgtgtcaggtcaaccattagctacttgacaaaa-----aaaaaaaaaaaatgat---------atcaaatttatataggacgtacattttttagcgaga 45458572  T
Q  310 tctatatcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||| ||||||| |||||||||    
T  45458571 tctatatcctttatatctgatcctagtaaacatgct 45458536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 45458859 - 45458795
Alignment:
Q  8 tcaacagggttgggatgtctatatttcactttaatgtttaaccacgctcttaagttcataacaac 72  Q
    |||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||    
T  45458859 tcaacagggttgggatgtctacgtttcactttaatgtttaaccacactcttaagttcataacaac 45458795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 346 - 452
Target Start/End: Complemental strand, 12518668 - 12518561
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgcacccc--aacttctctatgaataccatattaatcatattatatcacatgcttttcggttgt 443  Q
    |||||| ||||||| ||||||||  | || ||||||||||||||  ||||||||||| |||| ||||||||||||  |||  ||||||||||| ||||||    
T  12518668 caggggtggatctccttggagaccat-aggtgccactgcaccccccaacttctctataaatagcatattaatcattatatggcacatgcttttaggttgt 12518570  T
Q  444 tgtagtggt 452  Q
    |||||||||    
T  12518569 tgtagtggt 12518561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 47100114 - 47100184
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||| ||| |||||||||||| |  ||||||||||||||||| | |||| |||||||||||||||||||    
T  47100114 tttgaatctgtttaatatatattttttaaatatttggcacccccgaaaaaaaaactcaagatccgccactg 47100184  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 578 - 638
Target Start/End: Original strand, 25644881 - 25644941
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||||  | |||||||||||||||||| | |||| ||||||||||||||||||||    
T  25644881 ttaatatatatgtttcaaatatttggcacccccgaaaaaaaaactcaagatccgccactga 25644941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 634
Target Start/End: Complemental strand, 50770007 - 50769955
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    ||||||||||||||||||||||||||||| | |||  ||||||||||||||||    
T  50770007 tatatattctacaaatatttggcacccccgataaataaactcaagatccgcca 50769955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 43615981 - 43616040
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| | |||  |||| ||||||||||||| ||||||||||||||||||||    
T  43615981 ttaatatatattccataaaagtttgacacccccaacaaattaactcaagatccgccactg 43616040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 637
Target Start/End: Original strand, 2455942 - 2456008
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||  |||||||||||| ||||||||||||||||||  |||| |  ||||||||||||||||    
T  2455942 aaactgatatatatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactg 2456008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 637
Target Start/End: Complemental strand, 19466199 - 19466133
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||| |||||||||||||   ||||||||||||||||||| |||| || ||||||||| ||||||    
T  19466199 aaactgtttaatatatattcataaaatatttggcacccccaataaaaaaattcaagatccaccactg 19466133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 637
Target Start/End: Original strand, 4221355 - 4221424
Alignment:
Q  568 ttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||| ||||||||||||  | | |  |||||||||||||||||| ||| ||||||||||||||||    
T  4221355 ttgaaactgtttaatatatatttcatagaagtttggcacccccaacaaattaattcaagatccgccactg 4221424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 636
Target Start/End: Original strand, 27813746 - 27813815
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccact 636  Q
    |||||||||  ||| ||||||||||||||||||||| ||| ||| | |||  ||||||||||||||||||    
T  27813746 tttgaaactttttagtatatattctacaaatatttgacactcccgaaaaataaactcaagatccgccact 27813815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 638
Target Start/End: Complemental strand, 47649055 - 47648995
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    ||||||||||||| | | | ||||||||||||||| ||  |||||||||||||||||||||    
T  47649055 ttaatatatattccatagaaatttggcacccccaagaatttaactcaagatccgccactga 47648995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 638
Target Start/End: Original strand, 145515 - 145554
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  145515 tttggcacccccaacaaattaagtcaagatccgccactga 145554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 25644577 - 25644620
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||    
T  25644577 caggggcagatctctttggagaccctcagatgccattgcacccc 25644620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 571 - 609
Target Start/End: Original strand, 20362184 - 20362222
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccc 609  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  20362184 aaactgtttaatatatattctagaaatatttggcacccc 20362222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 637
Target Start/End: Complemental strand, 20383536 - 20383498
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  20383536 tttggcacccccaataaaattactcaagatccgccactg 20383498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 42641995 - 42641953
Alignment:
Q  347 aggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    |||||||||||||||||||||| | ||| ||||||||||||||    
T  42641995 aggggcggatctctttggagacccccaggtgccactgcacccc 42641953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 567 - 629
Target Start/End: Complemental strand, 44462521 - 44462460
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatc 629  Q
    |||||||||| ||| |||||||||||   |||||||||| |||||||||||| ||||||||||    
T  44462521 tttgaaactgtttattatatattctatcgatatttggca-ccccaacaaaattactcaagatc 44462460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Original strand, 52126885 - 52126915
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  52126885 atcctttatatctaatcctagcaaacatgct 52126915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 632
Target Start/End: Complemental strand, 19560270 - 19560237
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgc 632  Q
    |||||||||||||||||| |||||||||||||||    
T  19560270 tttggcacccccaacaaattaactcaagatccgc 19560237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 29129125 - 29129158
Alignment:
Q  310 tctatatcctttatatctaatcctagcaaacatg 343  Q
    |||| |||||||||||||||||||||||||||||    
T  29129125 tctaaatcctttatatctaatcctagcaaacatg 29129158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 1e-62; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 691 - 906
Target Start/End: Original strand, 40165337 - 40165547
Alignment:
Q  691 ccatgatcattgattgttgtcaacaacatgagaatcatttaagattctaattctactgttaattttcnnnnnnnttaaaataaagttgggaaatttggga 790  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||       ||||||||||||| ||||| ||||||    
T  40165337 ccatgatcattgattgttgtcaacaacatgaggatcatttaagattctaattctactgttatttttcttaaaaattaaaataaagtt-ggaaagttggga 40165435  T
Q  791 tgcttaggctgagagaaattgtttttcttgggttcatgtatatatttcttattagttttatttgtcttcccttggaatcctctccaaactttgcctttct 890  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||| |||| |||||||||| |||||||||| ||||    
T  40165436 tgcttaggctgagagaaactgtttttctt-ggttcatgtaaatattacttattagttttatttgtctt-ccttagaatcctctctaaactttgcc-ttct 40165532  T
Q  891 ttttccttctgtgtgt 906  Q
    |||| |||||||||||    
T  40165533 tttt-cttctgtgtgt 40165547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 567 - 638
Target Start/End: Complemental strand, 24441871 - 24441800
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||| ||| |||||||||||   ||||||||||||||||||||||| |||||||||||||||||||    
T  24441871 tttgaaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactga 24441800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 638
Target Start/End: Original strand, 4819832 - 4819903
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||| ||| |||||||||||   ||||||| ||||||||||||||| |||||||||||||||||||    
T  4819832 tttgaaactgtttattatatattctatcgatatttgacacccccaacaaaattactcaagatccgccactga 4819903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 43541205 - 43541275
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||| |||||||||||   ||||||||||||| ||||||||| ||||||||||||||||||    
T  43541205 tttgaaactgtttattatatattctatcgatatttggcaccctcaacaaaattactcaagatccgccactg 43541275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 19645458 - 19645519
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactgaa 639  Q
    ||||||||||||| | |||  |||||||||||||||||| ||||||||||||||||||||||    
T  19645458 ttaatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccactgaa 19645519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 571 - 639
Target Start/End: Complemental strand, 4428740 - 4428672
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactgaa 639  Q
    |||||| |||||||||||||| |||||||||||||||||| | |||| || ||||||||| ||||||||    
T  4428740 aaactgtttaatatatattcttcaaatatttggcacccccgaaaaaaaaattcaagatccaccactgaa 4428672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 16717205 - 16717264
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| | |||  |||||||||||||||||| ||||||||||||||||||||    
T  16717205 ttaatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccactg 16717264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 599 - 638
Target Start/End: Complemental strand, 16633664 - 16633625
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  16633664 tttggcacccccaacaaaattactcaagatccgccactga 16633625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 570 - 637
Target Start/End: Original strand, 24535341 - 24535408
Alignment:
Q  570 gaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||| |||||||||||||||    ||||||| ||||| |||||||||||||||||||| ||||||    
T  24535341 gaaactgtttaatatatattctatcgttatttggaaccccgaacaaaataactcaagatcctccactg 24535408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 582 - 637
Target Start/End: Complemental strand, 37022841 - 37022786
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||| || |||||||||||||||| |||  |||||||||||||||||||    
T  37022841 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 37022786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 634
Target Start/End: Original strand, 17549405 - 17549468
Alignment:
Q  569 tgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    |||||||| ||||||||||||||  |||||||||||||||||   |||| ||||||||||||||||    
T  17549405 tgaaactgtttaatatatattcttaaaatatttggcaccccc--gaaaaaaactcaagatccgcca 17549468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 638
Target Start/End: Complemental strand, 2866820 - 2866763
Alignment:
Q  581 atatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||||| ||||||||||||||||||  |||| |  |||||||||||||||||    
T  2866820 atatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactga 2866763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 2985698 - 2985757
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||  | |||  ||||| |||||||| ||||||||||||||||||||||||    
T  2985698 ttaatatatatttcataaacttttggtacccccaagaaaataactcaagatccgccactg 2985757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 4077837 - 4077868
Alignment:
Q  314 tatcctttatatctaatcctagcaaacatgct 345  Q
    ||||||||||||||||||||||||||||||||    
T  4077837 tatcctttatatctaatcctagcaaacatgct 4077868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 637
Target Start/End: Complemental strand, 20645640 - 20645585
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||||||||||||||| ||  | |||  |||||||||||||||||||    
T  20645640 tatatattctacaaatatttggcactccttagaaataaactcaagatccgccactg 20645585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 32275039 - 32274980
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||  | |||| ||||||| |||||| |||| |||||||||||||||||||    
T  32275039 ttaatatatatttcaaaaatgtttggcatccccaagaaaaaaactcaagatccgccactg 32274980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 567 - 637
Target Start/End: Complemental strand, 31736693 - 31736623
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| |||||||| |||||   ||||||||| || ||| | |||| |||||||||||||||||||    
T  31736693 tttgaaactgtttaatatacattctttcaatatttggtacgcccgaaaaaaaaactcaagatccgccactg 31736623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 571 - 637
Target Start/End: Original strand, 32487255 - 32487321
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||  |||||||||||| |||||||||||||||| |  |||| |  ||||||||||||||||    
T  32487255 aaactgatatatatatattctaaaaatatttggcacccctagaaaaaaagttcaagatccgccactg 32487321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 344
Target Start/End: Original strand, 30463750 - 30463779
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgc 344  Q
    ||||||||||||||||||||||||||||||    
T  30463750 atcctttatatctaatcctagcaaacatgc 30463779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 386 - 493
Target Start/End: Original strand, 49915616 - 49915726
Alignment:
Q  386 ccccaacttctctatgaataccatattaatcatattatatcacatgcttttcggttgttgtagtggttagaga---ccccaattgtcttgagggcgtgtg 482  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||   ||| |||||||||||||| |||||    
T  49915616 ccccaacttctctataaataccatattaatcataatatgtcacatgcttttgggttgttgtagtggtcagagaatcccctaattgtcttgagggtgtgtg 49915715  T
Q  483 ttcgactctct 493  Q
    |||||||||||    
T  49915716 ttcgactctct 49915726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 571 - 637
Target Start/End: Original strand, 3712791 - 3712857
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  3712791 aaactgattaatatatattctacgaatatttggcacccccaaaaaaataactcaagatccgccactg 3712857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 580 - 637
Target Start/End: Original strand, 25244867 - 25244924
Alignment:
Q  580 aatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  25244867 aatatatattctacaaatatttggcacccccaacaaaataagttaagatccgccactg 25244924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 581 - 638
Target Start/End: Original strand, 47476556 - 47476613
Alignment:
Q  581 atatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  47476556 atatatattccacaaatatttgacacccccaacaaaaaaactcaagatccgccactga 47476613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 39864714 - 39864784
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||  ||| ||||||||||||||||||||||||||||| | |||  |||||||||||||||||||    
T  39864714 tttgaaactttttagtatatattctacaaatatttggcacccccgagaaataaactcaagatccgccactg 39864784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 638
Target Start/End: Original strand, 49915778 - 49915856
Alignment:
Q  558 tggtattgatttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    ||||| || ||||||| ||||||||||||||||||| |||||||||||||||  | |||| || |||||||||||||||||    
T  49915778 tggtaatggtttgaaattgattaatatatattctaccaatatttggcacccc--aaaaaaaaattcaagatccgccactga 49915856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 567 - 634
Target Start/End: Original strand, 52764682 - 52764749
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    |||||||||| ||| |||||||||||   |||||||||||||||| |||||| |||||||||||||||    
T  52764682 tttgaaactgtttattatatattctatcgatatttggcacccccaccaaaattactcaagatccgcca 52764749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 637
Target Start/End: Complemental strand, 36565644 - 36565575
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| |||||||||||||| |||||||||| || ||| || |||| |||||||||||||||||||    
T  36565644 tttgaaactgtttaatatatattcttcaaatatttgaca-cccaaaaaaaaaaactcaagatccgccactg 36565575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 571 - 636
Target Start/End: Original strand, 4198498 - 4198563
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccact 636  Q
    |||||| ||||||||||||||  ||||||||||||||||| | |||| |||||||||||| |||||    
T  4198498 aaactgtttaatatatattctttaaatatttggcaccccctaaaaaaaaactcaagatccaccact 4198563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 713
Target Start/End: Original strand, 6922175 - 6922216
Alignment:
Q  672 actctgacacatgcctattccatgatcattgattgttgtcaa 713  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  6922175 actctgacacatgcatattccatgatcattgattgttgtcaa 6922216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 672 - 713
Target Start/End: Complemental strand, 38237703 - 38237662
Alignment:
Q  672 actctgacacatgcctattccatgatcattgattgttgtcaa 713  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  38237703 actctgacacatgcttattccatgatcattgattgttgtcaa 38237662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 580 - 635
Target Start/End: Complemental strand, 28702288 - 28702233
Alignment:
Q  580 aatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccac 635  Q
    ||||||||||| | |||  |||||||||||||||||| ||||||||||||||||||    
T  28702288 aatatatattccataaaagtttggcacccccaacaaattaactcaagatccgccac 28702233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 50432576 - 50432635
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| | | ||||||||||||||||||||  ||||||||||||||| ||||    
T  50432576 ttaatatatattccatatatatttggcacccccaacaatttaactcaagatccgcaactg 50432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 639
Target Start/End: Complemental strand, 52453736 - 52453675
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactgaa 639  Q
    ||||||||||||| | |||  |||||||||||||||||| |||||||| ||||| |||||||    
T  52453736 ttaatatatattccataaaagtttggcacccccaacaaattaactcaaaatccgtcactgaa 52453675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 47828029 - 47828081
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    |||||||||||| |||||||| ||||||||||||||||| |||| | ||||||    
T  47828029 tatatattctacgaatatttgacacccccaacaaaataattcaatagccgcca 47828081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 638
Target Start/End: Complemental strand, 14876822 - 14876783
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||||||||||| ||| |||||||||||||||||    
T  14876822 tttggcacccccaacaaattaagtcaagatccgccactga 14876783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 637
Target Start/End: Complemental strand, 16632164 - 16632109
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||||||||| |||||| || | |||  |||||||||||||||||||    
T  16632164 tatatattctacaaatattaggcacctccgagaaataaactcaagatccgccactg 16632109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 634
Target Start/End: Complemental strand, 29663895 - 29663840
Alignment:
Q  579 taatatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    |||||||||||| | |||  ||||||||||||| |||| |||||||||||||||||    
T  29663895 taatatatattccataaaagtttggcacccccagcaaattaactcaagatccgcca 29663840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 637
Target Start/End: Original strand, 10778469 - 10778507
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  10778469 tttggcacccccaacaaatttactcaagatccgccactg 10778507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 314 - 344
Target Start/End: Complemental strand, 39076295 - 39076265
Alignment:
Q  314 tatcctttatatctaatcctagcaaacatgc 344  Q
    |||||||||||||||||||||||||||||||    
T  39076295 tatcctttatatctaatcctagcaaacatgc 39076265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 40981666 - 40981636
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  40981666 atcctttatatctaatcctagcaaacatgct 40981636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 620
Target Start/End: Complemental strand, 2537118 - 2537077
Alignment:
Q  580 aatatatattctacaaatatttggca-cccccaacaaaataa 620  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  2537118 aatatatattctacaaatatttggcatgccccaacaaaataa 2537077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 3712508 - 3712564
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgca--ccccaacttctctat 400  Q
    |||||||||||||| |||||||| | ||| ||||||||||  |||||||||||||||    
T  3712508 caggggcggatctccttggagacccacaggtgccactgcaccccccaacttctctat 3712564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 639
Target Start/End: Original strand, 49289944 - 49290005
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactgaa 639  Q
    ||||||||||||  | | |||||||||||| |||||||  ||||||||||||||||| ||||    
T  49289944 ttaatatatatttcatatatatttggcacctccaacaatttaactcaagatccgccagtgaa 49290005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 50290430 - 50290463
Alignment:
Q  312 tatatcctttatatctaatcctagcaaacatgct 345  Q
    ||||||||||||||||||||||| ||||||||||    
T  50290430 tatatcctttatatctaatcctaacaaacatgct 50290463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 571 - 637
Target Start/End: Complemental strand, 30590281 - 30590215
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  30590281 aaactgattaatatatattctacgaatatttggcacccccaaaaaaataactcaagatccgccactg 30590215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 567 - 637
Target Start/End: Complemental strand, 34884372 - 34884301
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcaccccc-aacaaaataactcaagatccgccactg 637  Q
    |||||||||| |||||||||||||| |||||||||||||||||| || |||| |||||||||||||||||||    
T  34884372 tttgaaactgtttaatatatattcttcaaatatttggcacccccgaaaaaaaaaactcaagatccgccactg 34884301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 638
Target Start/End: Original strand, 3419204 - 3419275
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||| ||| |||||||||||| | |||||||||||||||||| | |||| ||||||||||||||||||||    
T  3419204 tttgaatctgtttaatatatatttttcaaatatttggcacccccgaaaaaaaaactcaagatccgccactga 3419275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 3418990 - 3419033
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  3418990 caggggcggatctctttggagacccccagatgccactgcacccc 3419033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 10172696 - 10172757
Alignment:
Q  578 ttaatatatattctacaaatatttggcaccccc--aacaaaataactcaagatccgccactg 637  Q
    |||||||||||||| |||||||||||||||| |  || |||| |||||||||||||||||||    
T  10172696 ttaatatatattcttcaaatatttggcaccctcgaaaaaaaaaaactcaagatccgccactg 10172757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 26229449 - 26229508
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaata-actcaagatccgccactg 637  Q
    |||||||||||||| |||||||||| ||||||||| |||||| ||| ||||||||||||||    
T  26229449 ttaatatatattcttcaaatatttgacacccccaa-aaaatatacttaagatccgccactg 26229508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 581 - 637
Target Start/End: Original strand, 33582820 - 33582876
Alignment:
Q  581 atatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| | || | |||||||||||||| ||||||| ||||||||||||||||    
T  33582820 atatatattccataactgtttggcacccccaaaaaaataaatcaagatccgccactg 33582876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 2753680 - 2753739
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||  | |||  ||||| |||||||| ||||||||||||||||||||||||    
T  2753680 ttaatatatatttcataaacttttggtacccccaagaaaataactcaagatccgccactg 2753739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 30682584 - 30682654
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||    
T  30682584 tttgaaactgtttaatatttattccacaaatatttggcacctccaacaaaataactcaagatctgccactg 30682654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 569 - 641
Target Start/End: Complemental strand, 14784697 - 14784624
Alignment:
Q  569 tgaaactgattaatatatattctacaaatatttggcaccccc-aacaaaataactcaagatccgccactgaaca 641  Q
    |||||||| |||||||||||||| |||||||||||||||||| || |||| |||||||||||||||||||||||    
T  14784697 tgaaactgtttaatatatattcttcaaatatttggcacccccgaaaaaaaaaactcaagatccgccactgaaca 14784624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 17756863 - 17756934
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacc-cccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| |||||||||||||| ||||||||||||||| || || |||| |||||||||||||||||||    
T  17756863 tttgaaactgtttaatatatattcttcaaatatttggcacctccgaaaaaaaaaactcaagatccgccactg 17756934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 638
Target Start/End: Original strand, 18774797 - 18774868
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||| ||| ||||||| |||   ||||||||||||||||||||||| |||||||||||||||||||    
T  18774797 tttgaaactgtttattatatatgctatcgatatttggcacccccaacaaaattactcaagatccgccactga 18774868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 19362705 - 19362764
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||||    
T  19362705 ttaatatatattccataaaagtttggcacccccaacaaaataactcaagatccgccactg 19362764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 637
Target Start/End: Complemental strand, 1075849 - 1075779
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||| ||| |||||||||||| |  ||||||||||||||||| | |||| |||||||||||||||||||    
T  1075849 tttgaatctgtttaatatatattttttaaatatttggcacccccgaaaaaaaaactcaagatccgccactg 1075779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 36724186 - 36724255
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||| ||| |||||||||||| | |||||||||||||||||| | |||| |||||||||||||||||||    
T  36724186 tttgaatctgtttaatatatatttttcaaatatttggcacccccga-aaaaaaactcaagatccgccactg 36724255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 1076140 - 1076097
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  1076140 caggggcggatctctttggagacccccagatgccactgcacccc 1076097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 12467633 - 12467574
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| | | || |||||||||||||||||  ||||||||||||||||||||    
T  12467633 ttaatatatattccatatatgtttggcacccccaacaatttaactcaagatccgccactg 12467574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 569 - 634
Target Start/End: Complemental strand, 15234728 - 15234665
Alignment:
Q  569 tgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    |||||||| ||||||||||||||  |||||||||||||||||   |||| ||||||||||||||||    
T  15234728 tgaaactgtttaatatatattcttaaaatatttggcaccccc--gaaaaaaactcaagatccgcca 15234665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 21524659 - 21524729
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||  |||||||||||   ||||||||||||||||||||||| |||||| | |||||||||    
T  21524659 tttgaaactgtttcttatatattctatcgatatttggcacccccaacaaaattactcaaaaaccgccactg 21524729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 568 - 634
Target Start/End: Original strand, 23328942 - 23329008
Alignment:
Q  568 ttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    ||||||||  ||| ||||||||||||||||||||||||||| | | |||  ||||||||||||||||    
T  23328942 ttgaaactttttagtatatattctacaaatatttggcaccctcgagaaataaactcaagatccgcca 23329008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 578 - 634
Target Start/End: Complemental strand, 12640360 - 12640304
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    ||||||||||||| | |||  |||||||||||| ||||| |||||||||||||||||    
T  12640360 ttaatatatattccataaaagtttggcacccccgacaaattaactcaagatccgcca 12640304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 12820431 - 12820372
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||  | | || |||||||||||||||||  ||||||||||||||||||||    
T  12820431 ttaatatatatttcatatatgtttggcacccccaacaatttaactcaagatccgccactg 12820372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 21267836 - 21267895
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||||| | | ||||||||||||||| ||  ||| ||||||||||||||||    
T  21267836 ttaatatatattctatagaaatttggcacccccaagaatttaattcaagatccgccactg 21267895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 21809368 - 21809325
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||    
T  21809368 caggggcggatctctttggagatcctcaggtgccactgcacccc 21809325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 637
Target Start/End: Original strand, 26954262 - 26954317
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||| |||||| | ||||||||||||| |||||||| | ||||||||||||||||    
T  26954262 tatattttctacgactatttggcaccccgaacaaaatcagtcaagatccgccactg 26954317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Original strand, 31642893 - 31642952
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| | |||  ||||||| |||||||||| |||||||||||| |||||||    
T  31642893 ttaatatatattccataaaagtttggcatccccaacaaattaactcaagatctgccactg 31642952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 40954910 - 40954851
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||  | | || |||||||||||||||||  ||||||||||||||||||||    
T  40954910 ttaatatatatttcatatatgtttggcacccccaacaatttaactcaagatccgccactg 40954851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 314 - 344
Target Start/End: Original strand, 13761780 - 13761810
Alignment:
Q  314 tatcctttatatctaatcctagcaaacatgc 344  Q
    |||||||||||||||||||||||||||||||    
T  13761780 tatcctttatatctaatcctagcaaacatgc 13761810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 601 - 631
Target Start/End: Complemental strand, 25790877 - 25790847
Alignment:
Q  601 tggcacccccaacaaaataactcaagatccg 631  Q
    |||||||||||||||||||||||||||||||    
T  25790877 tggcacccccaacaaaataactcaagatccg 25790847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 43080247 - 43080202
Alignment:
Q  344 ctcaggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||| ||||||||||||||||||| ||||| || |||||||||||    
T  43080247 ctcagaggcggatctctttggagaccctcaggtgtcactgcacccc 43080202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 635
Target Start/End: Original strand, 44598694 - 44598731
Alignment:
Q  598 atttggcacccccaacaaaataactcaagatccgccac 635  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  44598694 atttggcacccctaacaaattaactcaagatccgccac 44598731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 637
Target Start/End: Original strand, 44629502 - 44629571
Alignment:
Q  568 ttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||| | ||||||||||||| | | |  |||||||||||| |||||  |||||||||||||||||||    
T  44629502 ttgaaaccgtttaatatatattccatagaagtttggcaccccctacaaatcaactcaagatccgccactg 44629571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 64720 - 64790
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||||||    
T  64720 tttgaaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 64790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 567 - 637
Target Start/End: Complemental strand, 35958869 - 35958799
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||||||    
T  35958869 tttgaaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 35958799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 637
Target Start/End: Original strand, 10616842 - 10616908
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||| ||||||| ||||| | |||||||||||||| |||||||||||| |||||||||| |||||    
T  10616842 aaactgtttaatatttattccataaatatttggcacctccaacaaaataattcaagatccgtcactg 10616908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 636
Target Start/End: Complemental strand, 24888047 - 24887989
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccact 636  Q
    ||||||||||||| | |||  |||||||||||||||||| |||||||||||||||||||    
T  24888047 ttaatatatattccataaaattttggcacccccaacaaattaactcaagatccgccact 24887989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 599 - 637
Target Start/End: Complemental strand, 24915702 - 24915664
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24915702 tttggcacccccaacaaaataactcaagatccgccactg 24915664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 567 - 637
Target Start/End: Complemental strand, 39580660 - 39580590
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||  ||| ||||||||||||||||||||||| ||| | |||||  |||||||||||||||||||    
T  39580660 tttgaaactttttagtatatattctacaaatatttggctccctcgacaaataaactcaagatccgccactg 39580590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 638
Target Start/End: Complemental strand, 27084319 - 27084262
Alignment:
Q  581 atatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||| | |||  |||||||||||||||||| ||||||||||| |||||||||    
T  27084319 atatatattccataaaagtttggcacccccaacaaattaactcaagattcgccactga 27084262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 345
Target Start/End: Original strand, 38681134 - 38681167
Alignment:
Q  312 tatatcctttatatctaatcctagcaaacatgct 345  Q
    ||||||||||||||||||||||||||||||||||    
T  38681134 tatatcctttatatctaatcctagcaaacatgct 38681167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 8643313 - 8643254
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| |||||||||||||||| |||| |||  |  ||||||||||||||||    
T  8643313 ttaatatatattcgacaaatatttggcacctccaaaaaatgatatcaagatccgccactg 8643254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 638
Target Start/End: Complemental strand, 34628481 - 34628442
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactga 638  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  34628481 tttggcatccccaacaaaataactcaagatccgccgctga 34628442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 637
Target Start/End: Original strand, 46960 - 46998
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  46960 tttgacacccccaacaaaataacttaagatccgccactg 46998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 582 - 637
Target Start/End: Complemental strand, 19922288 - 19922231
Alignment:
Q  582 tatatattctacaaatattt--ggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||||||||||  ||||| ||||| |||  |||||||||||||||||||    
T  19922288 tatatattctacaaatatttttggcactcccaagaaataaactcaagatccgccactg 19922231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 567 - 613
Target Start/End: Complemental strand, 42446753 - 42446707
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaac 613  Q
    |||||||||| ||||||||||||| | |||||||||| |||||||||    
T  42446753 tttgaaactgtttaatatatattccataaatatttggtacccccaac 42446707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 16779213 - 16779265
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgccac 635  Q
    |||||||||||| ||||||||||| |||||||||||||| |||| |||| ||||    
T  16779213 tatatattctacgaatatttggca-ccccaacaaaataagtcaaaatccaccac 16779265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 639
Target Start/End: Complemental strand, 24643664 - 24643623
Alignment:
Q  598 atttggcacccccaacaaaataactcaagatccgccactgaa 639  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||    
T  24643664 atttggcacccccaaaaaattaagtcaagatccgccactgaa 24643623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 14968136 - 14968206
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||||||    
T  14968136 tttgaaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 14968206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 29132907 - 29132977
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||||||    
T  29132907 tttgaaactgtttattatatattctatcgatatttggcacccccaacaaaattactcaagatccgccactg 29132977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 638
Target Start/End: Complemental strand, 22910847 - 22910776
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||  ||| ||||||||||||||||||||||||||||| | |||  ||||||||||||||||||||    
T  22910847 tttgaaactttttagtatatattctacaaatatttggcacccccgagaaataaactcaagatccgccactga 22910776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 638
Target Start/End: Original strand, 22967675 - 22967746
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||  ||| ||||||||||||||||||||||||||||| | |||  ||||||||||||||||||||    
T  22967675 tttgaaactttttagtatatattctacaaatatttggcacccccgagaaataaactcaagatccgccactga 22967746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 567 - 628
Target Start/End: Complemental strand, 5232352 - 5232291
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagat 628  Q
    |||||||||| ||||||||||||| | |||||||||||||||  ||||||| ||||||||||    
T  5232352 tttgaaactgtttaatatatattccataaatatttggcacccgaaacaaaaaaactcaagat 5232291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 571 - 636
Target Start/End: Complemental strand, 19090514 - 19090449
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccact 636  Q
    |||||| ||| ||| ||||| ||||||||||| ||||||||||||||||| |||||||||| ||||    
T  19090514 aaactgtttagtatttattccacaaatatttgacacccccaacaaaataattcaagatccgtcact 19090449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 27993682 - 27993623
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||| ||||||||||||||||||||| |||  |  ||||||||||||||||    
T  27993682 ttaatatatattccacaaatatttggcacccccaaaaaatgatatcaagatccgccactg 27993623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 637
Target Start/End: Complemental strand, 55406539 - 55406473
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||  |||||||||||| |||||||||||||||| || |||| |  ||||||||||||||||    
T  55406539 aaactgatatatatatattctaaaaatatttggcaccccaaaaaaaaaagttcaagatccgccactg 55406473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 638
Target Start/End: Complemental strand, 9457017 - 9456946
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||  ||||||| |||| | |||||||||| ||||||| | |||| ||||||||||||| ||||||    
T  9457017 tttgaaactatttaatatctattattcaaatatttgacacccccgaaaaaaaaactcaagatccgtcactga 9456946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 35187689 - 35187646
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||    
T  35187689 caggggcggatctctttagagacccccagatgccactgcacccc 35187646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 45071297 - 45071368
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcaccc-ccaacaaaataactcaagatccgccactg 637  Q
    |||||||||  |||||||||||||| ||||||||| |||||| | || |||| |||||||||||| ||||||    
T  45071297 tttgaaactatttaatatatattcttcaaatattttgcaccctcgaaaaaaaaaactcaagatccaccactg 45071368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 634
Target Start/End: Complemental strand, 46851900 - 46851865
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgcca 634  Q
    |||||||||||||||||| |||||||||||||||||    
T  46851900 tttggcacccccaacaaattaactcaagatccgcca 46851865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14210491 - 14210461
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14210491 atcctttatatctaatcctagcaaacatgct 14210461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14211460 - 14211430
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14211460 atcctttatatctaatcctagcaaacatgct 14211430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14212411 - 14212381
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14212411 atcctttatatctaatcctagcaaacatgct 14212381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14213380 - 14213350
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14213380 atcctttatatctaatcctagcaaacatgct 14213350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14214348 - 14214318
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14214348 atcctttatatctaatcctagcaaacatgct 14214318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14215317 - 14215287
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14215317 atcctttatatctaatcctagcaaacatgct 14215287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14218188 - 14218158
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14218188 atcctttatatctaatcctagcaaacatgct 14218158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14219158 - 14219128
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14219158 atcctttatatctaatcctagcaaacatgct 14219128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14220127 - 14220097
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14220127 atcctttatatctaatcctagcaaacatgct 14220097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14221078 - 14221048
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14221078 atcctttatatctaatcctagcaaacatgct 14221048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14222047 - 14222017
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14222047 atcctttatatctaatcctagcaaacatgct 14222017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 315 - 345
Target Start/End: Complemental strand, 14223016 - 14222986
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgct 345  Q
    |||||||||||||||||||||||||||||||    
T  14223016 atcctttatatctaatcctagcaaacatgct 14222986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 571 - 637
Target Start/End: Original strand, 26494710 - 26494776
Alignment:
Q  571 aaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||| ||||||||||||| |  ||  |||||||||||||| ||| | ||||||||||||||||||    
T  26494710 aaactgtttaatatatattccatgaaagtttggcacccccaaaaaatttactcaagatccgccactg 26494776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 578 - 640
Target Start/End: Original strand, 49497679 - 49497741
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactgaac 640  Q
    ||||||||||||  | | || |||| ||||||||||||  |||||||||||||||||||||||    
T  49497679 ttaatatatatttcatatatgtttgacacccccaacaatttaactcaagatccgccactgaac 49497741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 637
Target Start/End: Original strand, 50070209 - 50070247
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  50070209 tttggcacccccaacaaattaagtcaagatccgccactg 50070247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 637
Target Start/End: Complemental strand, 50720167 - 50720129
Alignment:
Q  599 tttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  50720167 tttggcacccacaagaaaataactcaagatccgccactg 50720129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 344
Target Start/End: Complemental strand, 1678521 - 1678492
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgc 344  Q
    ||||||||||||||||||||||||||||||    
T  1678521 atcctttatatctaatcctagcaaacatgc 1678492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 8823662 - 8823621
Alignment:
Q  348 ggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||    
T  8823662 ggggcggatctctttagagaccctcaggtgccactgcacccc 8823621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 344
Target Start/End: Complemental strand, 14586910 - 14586881
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgc 344  Q
    ||||||||||||||||||||||||||||||    
T  14586910 atcctttatatctaatcctagcaaacatgc 14586881  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 567 - 637
Target Start/End: Original strand, 13764871 - 13764941
Alignment:
Q  567 tttgaaactgattaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||| ||| |||||||||||| | |||||||||||||||||| | |||| |||||||||||||||||||    
T  13764871 tttgaatctgtttaatatatatttttcaaatatttggcacccccgaaaaaaaaactcaagatccgccactg 13764941  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 488
Target Start/End: Complemental strand, 28681719 - 28681637
Alignment:
Q  407 catattaatcatattatatcacatgcttttcggttgttgtagtggttaga-gaccccaattgtcttgagggcgtgtgttcgac 488  Q
    ||||||||||||| ||||||||| | |||| ||||||||||||||| |||  |||||||||||||||| | ||||||| ||||    
T  28681719 catattaatcataatatatcacaagtttttaggttgttgtagtggtcagacaaccccaattgtcttgaagacgtgtgtgcgac 28681637  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 634
Target Start/End: Original strand, 26823150 - 26823202
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgcca 634  Q
    ||||||||||||||||||||||||||||| | |||  ||||||||||||||||    
T  26823150 tatatattctacaaatatttggcacccccgataaataaactcaagatccgcca 26823202  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 4580613 - 4580554
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||||  | | ||||||||||||||||||||  ||||||||||||||||||||    
T  4580613 ttaatatatatttcatatatatttggcacccccaacaatttaactcaagatccgccactg 4580554  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 578 - 637
Target Start/End: Complemental strand, 43822658 - 43822599
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    |||||||||||||||||||||||||  |||||| | |||  |||||||||||||||||||    
T  43822658 ttaatatatattctacaaatatttgcaacccccgagaaataaactcaagatccgccactg 43822599  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 840 - 906
Target Start/End: Complemental strand, 7827137 - 7827074
Alignment:
Q  840 tattagttttatttgtcttcccttggaatcctctccaaactttgcctttctttttccttctgtgtgt 906  Q
    ||||||||||||||||||| |||| |||||||||| |||||||||| |||||||| |||||||||||    
T  7827137 tattagttttatttgtctt-cctttgaatcctctctaaactttgcc-ttcttttt-cttctgtgtgt 7827074  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 638
Target Start/End: Complemental strand, 40934709 - 40934652
Alignment:
Q  581 atatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactga 638  Q
    |||||||||||| ||||||||||||||||||  |||| |  |||||||||||||||||    
T  40934709 atatatattctaaaaatatttggcacccccagaaaaaaagttcaagatccgccactga 40934652  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 345
Target Start/End: Original strand, 26449092 - 26449123
Alignment:
Q  314 tatcctttatatctaatcctagcaaacatgct 345  Q
    ||||||||||||||||||||||||||||||||    
T  26449092 tatcctttatatctaatcctagcaaacatgct 26449123  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 686 - 736
Target Start/End: Complemental strand, 7827204 - 7827154
Alignment:
Q  686 ctattccatgatcattgattgttgtcaacaacatgagaatcatttaagatt 736  Q
    ||||||||||||| |||||||||| ||||||| |||| |||| ||||||||    
T  7827204 ctattccatgatcgttgattgttgacaacaacttgaggatcaattaagatt 7827154  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 581 - 635
Target Start/End: Original strand, 12921021 - 12921075
Alignment:
Q  581 atatatattctacaaatatttggcacccccaacaaaataactcaagatccgccac 635  Q
    |||||||||| |||||||||| ||||| |||| |||||||||||| || ||||||    
T  12921021 atatatattccacaaatatttagcacctccaataaaataactcaaaattcgccac 12921075  T

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Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 582 - 637
Target Start/End: Original strand, 230594 - 230649
Alignment:
Q  582 tatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||| || |||||||||||||||| |||  |||||||||||||||||||    
T  230594 tatatattctaaaactatttggcacccccaagaaataaactcaagatccgccactg 230649  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 181481 - 181524
Alignment:
Q  346 caggggcggatctctttggagactctcagatgccactgcacccc 389  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  181481 caggggcggatctctttggagacccccagatgccactgcacccc 181524  T

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Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 579 - 637
Target Start/End: Original strand, 181792 - 181850
Alignment:
Q  579 taatatatattctacaaatatttggcacccccaacaaaataactcaagatccgccactg 637  Q
    ||||||||||  | |||||||||||||||||| | |||| |||||||||||||||||||    
T  181792 taatatatatctttcaaatatttggcacccccgaaaaaaaaactcaagatccgccactg 181850  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 630
Target Start/End: Complemental strand, 24204 - 24166
Alignment:
Q  591 tacaaatatttggcacccccaacaaaataactcaagatcc 630  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  24204 tacaaatatttggcacccc-aacaaaataactcaagatcc 24166  T

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Target: scaffold0542 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 578 - 612
Target Start/End: Complemental strand, 9738 - 9704
Alignment:
Q  578 ttaatatatattctacaaatatttggcacccccaa 612  Q
    ||||||||||||| |||||||||||||||||||||    
T  9738 ttaatatatattccacaaatatttggcacccccaa 9704  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 315 - 344
Target Start/End: Original strand, 230464 - 230493
Alignment:
Q  315 atcctttatatctaatcctagcaaacatgc 344  Q
    ||||||||||||||||||||||||||||||    
T  230464 atcctttatatctaatcctagcaaacatgc 230493  T

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