View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-10 (Length: 504)
Name: NF0440-8F-Insertion-10
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 4 - 504
Target Start/End: Complemental strand, 50420195 - 50419695
Alignment:
| Q |
4 |
aacacatttgacactagacattccttcaatctgaagtgtcgatgctacatagtttatgaactccggaatgctaacatgcgaccacattttccaaccaata |
103 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50420195 |
aacacattagacactaggcattccttcaatctgaagtgtcgatgctacatagtttgtgaactccggaatgctaacatgcgaccacattttccaaccaaga |
50420096 |
T |
|
| Q |
104 |
acagtgaaatgaacgccttttttgcttgaagtttcttgcagattactcctgtgttatgaattcatttttgttcttagttttttgcaagaaaatctatcgg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50420095 |
acagtgaaatgaacgccttttttgcttgaagtttcttgcagaatactcctgtgttatgaattcatttttgttcttagttttttgcaagaaaatctatcgg |
50419996 |
T |
|
| Q |
204 |
gactatttttcggagtcagcaaaatttggcagacttgagtgcaagaggataaacaaaagaattggtataagtgaatctaatgatttgactagaggttaaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419995 |
gactatttttcggagtcagcaaaatttggcagacttgagtgcaagaggataaacaaaagaattggtataagtgaatctaatgatttgactagaggttaaa |
50419896 |
T |
|
| Q |
304 |
ggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaaggtgaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419895 |
ggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaaggtgaa |
50419796 |
T |
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| Q |
404 |
tattatatggagcacactcagaagaaacacaagtattgacaatttgcactacatacttagggattccagttagagtctctctactttgtgaaatgcttat |
503 |
Q |
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| T |
50419795 |
tattatatggagcacactcagaagaaacacaagtattgacaatttgcactacatacttagggattccagttagagtctctctactttgtgaaatgcttat |
50419696 |
T |
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| Q |
504 |
g |
504 |
Q |
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| |
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| T |
50419695 |
g |
50419695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 219 - 452
Target Start/End: Original strand, 13045984 - 13046214
Alignment:
| Q |
219 |
tcagcaaaatttggcagacttgagtgcaagaggataaacaaaagaattggtataagtgaatctaatgatttgactagaggttaaaggttttcctccattc |
318 |
Q |
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|||||||||| | |||||||||| ||||||||| || | ||||||||| | ||||||||||||||| || || |||| |||||||| || ||||||| | |
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| T |
13045984 |
tcagcaaaatctagcagacttgaatgcaagagggtacataaaagaattagaataagtgaatctaataatctggttagaagttaaaggcttccctccatgc |
13046083 |
T |
|
| Q |
319 |
accaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcac |
418 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||| |
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| T |
13046084 |
accaaacaatcatcataagagagtctcttgaacaatttagggttgattattcttgcagaagcaaaccaaccacagtgaagatggatatcataaggagcac |
13046183 |
T |
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| Q |
419 |
actcagaagaaacacaagtattgacaatttgcac |
452 |
Q |
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| T |
13046184 |
atcc---agaaacacaagtgttaacaatttgcac |
13046214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 219 - 398
Target Start/End: Complemental strand, 8997251 - 8997075
Alignment:
| Q |
219 |
tcagcaaaatttggcagacttgagtgcaagaggataaacaaaagaattggtataagtgaatctaatgatttgactagaggttaaaggttttcctccattc |
318 |
Q |
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|||||||||| | ||||| |||| ||||||||| || | || ||||| | ||||||||||||||| ||||| ||||| || ||||| || ||||||||| |
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| T |
8997251 |
tcagcaaaatctagcagatttgaatgcaagagggtacataagggaattagaataagtgaatctaataatttggctagaagt-aaaggcttccctccattc |
8997153 |
T |
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| Q |
319 |
accaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaag |
398 |
Q |
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||||||| | | || |||| |||||||| |||||| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
8997152 |
accaaacgaac--cataagagagtctcttaaacaatctaggattgtttattcttgcagaagcaaaccaaccacagtgaag |
8997075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 219 - 419
Target Start/End: Complemental strand, 9013374 - 9013177
Alignment:
| Q |
219 |
tcagcaaaatttggcagacttgagtgcaagaggataaacaaaagaattggtataagtgaatctaatgatttgactagaggttaaaggttttcctccattc |
318 |
Q |
| |
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|||| ||||| | |||||||||| ||||||||| | | || ||||| | ||||||||||||||| || || ||||| || ||||| || ||||||||| |
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| T |
9013374 |
tcaggaaaatctagcagacttgaatgcaagaggtttcataagggaattagaataagtgaatctaataatctggctagaagt-aaaggcttccctccattc |
9013276 |
T |
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| Q |
319 |
accaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcac |
418 |
Q |
| |
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||||||| | | || |||| |||||||| |||||| |||| ||| |||||||||||||||||||||| ||||||||||| || |||| || ||||||| |
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| T |
9013275 |
accaaaccaac--cataagagagtctcttaaacaatctaggattgtttattcttgcagaagcaaaccaaccacagtgaagatggatatcattaggagcac |
9013178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 8979855 - 8979797
Alignment:
| Q |
340 |
agtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaag |
398 |
Q |
| |
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|||||||| |||||| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
8979855 |
agtctcttaaacaatctaggattgtttattcttgcagaagcaaaccaaccacagtgaag |
8979797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 9031024 - 9030892
Alignment:
| Q |
219 |
tcagcaaaatttggcagacttgagtgcaagaggataaacaaaagaattggtataagtgaatctaatgatttgactagaggttaaaggttttcctccattc |
318 |
Q |
| |
|
|||||||||| | |||||||||| ||||||||| | | || ||||| | ||||||||||||||| ||||| ||||| | |||||| || ||||||||| |
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| T |
9031024 |
tcagcaaaatctagcagacttgaatgcaagagggcacataagggaattagaataagtgaatctaataatttggctagaag-taaaggcttccctccattc |
9030926 |
T |
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| Q |
319 |
accaaacaatcatcaaaagatagtctcttgaacaat |
354 |
Q |
| |
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||||||| | | || |||| ||||||||||||||| |
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| T |
9030925 |
accaaacga--accataagagagtctcttgaacaat |
9030892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 16315955 - 16315989
Alignment:
| Q |
13 |
gacactagacattccttcaatctgaagtgtcgatg |
47 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
16315955 |
gacactagacatcccttcaatctgaagtgtcgatg |
16315989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 4206757 - 4206802
Alignment:
| Q |
14 |
acactagacattccttcaatctgaagtgtcgatgctacatagttta |
59 |
Q |
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| T |
4206757 |
acactagacatgccttcaatgtgaagtgtcggtgttacatagttta |
4206802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 33267923 - 33267956
Alignment:
| Q |
26 |
ccttcaatctgaagtgtcgatgctacatagttta |
59 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
33267923 |
ccttcaatctgaagtgtcggtgctacatagttta |
33267956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 8431240 - 8431211
Alignment:
| Q |
26 |
ccttcaatctgaagtgtcgatgctacatag |
55 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
8431240 |
ccttcaatctgaagtgtcgatgctacatag |
8431211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 42252220 - 42252184
Alignment:
| Q |
20 |
gacattccttcaatctgaagtgtcgatgctacatagt |
56 |
Q |
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||||| ||||||||||||||||||| ||||||||||| |
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| T |
42252220 |
gacatgccttcaatctgaagtgtcggtgctacatagt |
42252184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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