View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-8F-Insertion-11 (Length: 470)

Name: NF0440-8F-Insertion-11
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-8F-Insertion-11
NF0440-8F-Insertion-11
[»] chr3 (1 HSPs)
chr3 (89-470)||(54729748-54730128)
[»] chr6 (1 HSPs)
chr6 (89-470)||(5304139-5304509)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 89 - 470
Target Start/End: Complemental strand, 54730128 - 54729748
Alignment:
Q  89 tttaaccaatcgtaaaccatcttagcccaaattagtgcgttgtggcccgaattaacacataatcggaccatattatattgacccaaaaaatttgcttttt 188  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54730128 tttaaacaatcgtaaaccatcttagcccaaatttgtgcgttgtggcccgaattaacacataatcggaccatattatattgacccaaaaaatttgcttttt 54730029  T
Q  189 catacggtaacannnnnnnnnngttgtaaaaccctaggtgatataggtttgtgattgtgaatttgtgatcactgatctgcgtactttctcttcaaacttc 288  Q
    ||||||||||||           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  54730028 catacggtaacattttttttt--ttgtaaaaccctagatgatataggtttgtgattgtgaatttgtgatcgctgatctgcgtactttctcttcaaacttg 54729931  T
Q  289 aattccttagtttctcttcaattttttgctgctaattttcgttctgtgtatgttttgatggcactcttaggctccaaagaaggacaaggctcctccacct 388  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54729930 aattccttagattctcttcaattttttgctactaattttcgttctgtgtatgttttgatggcactcttaggctccaaagaaggacaaggctcctccacct 54729831  T
Q  389 tcctccataaacccgccaagtccggtggtggcaaac---agaagaaggttcacatttttcttcttaaagttctaattaatttttt 470  Q
    ||||||  ||||||||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||    
T  54729830 tcctcc--aaacccgccaagtccggtggtggcaaacagaagaagaaggttcacatttttcttcataaagttctaattaatttttt 54729748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 89 - 470
Target Start/End: Complemental strand, 5304509 - 5304139
Alignment:
Q  89 tttaaccaatcgtaaaccatcttagcccaaattagtgcgttgtggcccgaattaacacataatcggaccatattatattgacccaaaaaatttgcttttt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5304509 tttaaccaatcgtaaaccatcttagcccaaattagtgcgttgtggcccgaattaacacataatcggaccatattatattgacccaaaaaatttgcttttt 5304410  T
Q  189 catacggtaacannnnnnnnnngttgtaaaaccctaggtgatataggtttgtgattgtgaatttgtgatcactgatctgcgtactttctcttcaaacttc 288  Q
    ||||||||||||           ||||||||           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  5304409 catacggtaacattttttttt--ttgtaaaag----------ataggtttgtgattgtgaatttgtgatcacttatctgcgtactttctcttcaaacttg 5304322  T
Q  289 aattccttagtttctcttcaattttttgctgctaattttcgttctgtgtatgttttgatggcactcttaggctccaaagaaggacaaggctcctccacct 388  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5304321 aattccttagtttctcttcaattttttgctactaattttcgttctgtgtatgttttgatggcactctaaggctccaaagaaggacaaggctcctccacct 5304222  T
Q  389 tcctccataaacccgccaagtccggtggtggcaaac---agaagaaggttcacatttttcttcttaaagttctaattaatttttt 470  Q
    ||||||  ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  5304221 tcctcc--aaacccgccaagtccggtggtggcaaacagaagaagaaggttcacatttttcttcttaaagttctaattaatttttt 5304139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University