View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-12 (Length: 364)
Name: NF0440-8F-Insertion-12
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-12 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 364
Target Start/End: Original strand, 1948668 - 1949026
Alignment:
| Q |
7 |
aataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagt |
106 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1948668 |
aataatggcaaacagcaatcagcccttcagtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagt |
1948767 |
T |
|
| Q |
107 |
ccctagattcatcacgtgtttcccatattctagggttatatctctgtaagaataagtaaatgagagttaaattaattttaaaatgtttcggccagttcga |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
1948768 |
ccctagattcatcacgtgtttcccatattctagggttatatctctgtaagaataagtaaatgagaattaaattaattttaaaatgtttcggtcagttcga |
1948867 |
T |
|
| Q |
207 |
agcacatgatattgcaagagatatgatataatataaagcatgataaagatatgatatgatttctttttactaataatatcttcgatcgaaaggtaag-ga |
305 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1948868 |
agcacatgatactacaagagatatgatataatataaagcatgataaagatatgatatgatttctttttactaataatatcttcgatcgaaaggtaagaaa |
1948967 |
T |
|
| Q |
306 |
agcccgacaaaaaattgttcgatctagaaatcgaactgaggttcttttaaacaattcgt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1948968 |
agcccgacaaaaaattgttcgatctagaaatcgaactgaggttcttctaaacaattcgt |
1949026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 2029487 - 2029315
Alignment:
| Q |
7 |
aataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagt |
106 |
Q |
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|||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||| || ||| |
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| T |
2029487 |
aataatggcaaagagcaattagcccttcggcacaacccatatcttttagatggtttggattcaaacctaaagcttgtgacaacaattcaaacagcaaagt |
2029388 |
T |
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| Q |
107 |
ccctagattcatcacgtgtttcccatattctagggttatatctctgtaagaataagtaaatgagagttaaatt |
179 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||| |||||| |
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| T |
2029387 |
tcctagattcatcacctgtttcccatattctagtagtatatctctgcaagaattagtaaatgagagctaaatt |
2029315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 2050778 - 2050624
Alignment:
| Q |
7 |
aataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagt |
106 |
Q |
| |
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|||||||||||| |||||| |||||||| | ||||||||||||||||||||||||||| |||| ||||| |||||||||| |||||||| | | ||| |
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| T |
2050778 |
aataatggcaaagagcaattagcccttcagcacaacccatatcttttagatggtttggattcagtcctaaagcttctgacatcaattcaaatagtaaagt |
2050679 |
T |
|
| Q |
107 |
ccctagattcatcacgtgtttcccatattctagggttatatctctgtaagaataa |
161 |
Q |
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|||||||||||||| ||||||||||||||||| ||| |||||||||||||||| |
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| T |
2050678 |
tcctagattcatcacctgtttcccatattctagtattacatctctgtaagaataa |
2050624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 2034044 - 2033891
Alignment:
| Q |
9 |
taatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtcc |
108 |
Q |
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|||||||||| ||||||||||||||| | |||| |||||||||| | ||||||||| ||||||||||||||||||||||| |||||||| || | ||||| |
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| T |
2034044 |
taatggcaaagagcaatcagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtcc |
2033945 |
T |
|
| Q |
109 |
ctagattcatcacgtgtttcccatattctagggttatatctctgtaagaataag |
162 |
Q |
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|||||||||||| || ||||||||||| || |||||||||| ||||||||| |
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| T |
2033944 |
ctagattcatcatgtatttcccatattgtaacagtatatctctgcaagaataag |
2033891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 2055185 - 2055060
Alignment:
| Q |
9 |
taatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtcc |
108 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||| |||||||||| | ||||||||| ||||||||||||||||||||||| |||||||| || | ||||| |
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| T |
2055185 |
taatggcaaagagcaatcagcccttcagcacaatccatatctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtcc |
2055086 |
T |
|
| Q |
109 |
ctagattcatcacgtgtttcccatat |
134 |
Q |
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|||||||||||| ||||||||||||| |
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| T |
2055085 |
ctagattcatcatgtgtttcccatat |
2055060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 2058011 - 2057854
Alignment:
| Q |
7 |
aataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagt |
106 |
Q |
| |
|
||||||| |||| |||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| | ||| |
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| T |
2058011 |
aataatgacaaagagcaattagcccttcagcacaacccatatcttttagatggtttggattcaaacctaaagcttctgacaacaattcaaacagtaaagt |
2057912 |
T |
|
| Q |
107 |
ccctagattcatcacgtgtttcccatattctagggttatatctctgtaagaataagta |
164 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| | | ||||||| ||||| ||||| |
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| T |
2057911 |
tcctagattcatcacttgtttcccatattatagtatcacatctctgcaagaacaagta |
2057854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 2046863 - 2046709
Alignment:
| Q |
7 |
aataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagt |
106 |
Q |
| |
|
|||||||||||| ||||| | ||||| |||||| |||||||||||||||| ||||| | ||||||||| |||| || || ||||||||||| | ||| |
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| T |
2046863 |
aataatggcaaagagcaaataacccttgagtacaatccatatcttttagatgatttggatgcaaacctaaatcttcagataacaattcaaacaataaagt |
2046764 |
T |
|
| Q |
107 |
ccctagattcatcacgtgtttcccatattctagggttatatctctgtaagaataa |
161 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| ||||||||||| |||||||| |
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|
| T |
2046763 |
ccctagattcatcatgtgttttccatattctagtattatatctctgcaagaataa |
2046709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 2037610 - 2037465
Alignment:
| Q |
7 |
aataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagt |
106 |
Q |
| |
|
|||||||||||| ||||| || |||| | |||| |||||||||||||||||||||| |||| |||||| |||||||| || |||| ||||| | || |
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| T |
2037610 |
aataatggcaaagagcaaatagtcctttagcacaatccatatcttttagatggtttggattcagacctaaagcttctgataacaattaaaacagtaaggt |
2037511 |
T |
|
| Q |
107 |
ccctagattcatcacgtgtttcccatattctagggttatatctctg |
152 |
Q |
| |
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||||||||| ||| |||||| ||||||||||| |||||||||| |
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| T |
2037510 |
ccctagatttgtcatgtgttttccatattctagaagtatatctctg |
2037465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 10768473 - 10768366
Alignment:
| Q |
45 |
atatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgtttcccatattctagggtta |
144 |
Q |
| |
|
|||||||||||||||||||| |||| |||||| |||||||| | | ||||||||| | ||||||||| || ||| |||||| ||||||||||| || |
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| T |
10768473 |
atatcttttagatggtttggattcagacctaaagcttctgagcatagttcaaacaataaagtccctaggtttctcatgtgttttccatattctagcaata |
10768374 |
T |
|
| Q |
145 |
tatctctg |
152 |
Q |
| |
|
|||||||| |
|
|
| T |
10768373 |
tatctctg |
10768366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 48906964 - 48907054
Alignment:
| Q |
7 |
aataatggcaaacagcaatcagcccttcggtacaacccatatcttttagatggtttggtttcaaacctaatgcttctgacaaaaattcaaa |
97 |
Q |
| |
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||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||| |||||||| |
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| T |
48906964 |
aataatggcaagcagcaattagcccttcaacacaacccatatcttttagatggtttggattcagacctaaagcttctgacagcaattcaaa |
48907054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 4160653 - 4160705
Alignment:
| Q |
309 |
ccgacaaaaaattgttcgatctagaaatcgaactgaggttcttttaaacaatt |
361 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| ||||||| |||||||||| |
|
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| T |
4160653 |
ccgacaaaaaattgttacatctagaaattgaactcaggttctcttaaacaatt |
4160705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 7570360 - 7570398
Alignment:
| Q |
311 |
gacaaaaaattgttcgatctagaaatcgaactgaggttc |
349 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
7570360 |
gacaaaaaattgttcaatctagaaatcgaactcaggttc |
7570398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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