View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-8F-Insertion-16 (Length: 107)

Name: NF0440-8F-Insertion-16
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-8F-Insertion-16
NF0440-8F-Insertion-16
[»] chr7 (5 HSPs)
chr7 (10-107)||(45282784-45282881)
chr7 (9-107)||(45271009-45271107)
chr7 (10-99)||(45274543-45274632)
chr7 (15-107)||(45294177-45294269)
chr7 (15-107)||(45303137-45303229)
[»] chr1 (1 HSPs)
chr1 (66-106)||(38583244-38583284)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 9e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 9e-49
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 45282784 - 45282881
Alignment:
Q  10 ttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45282784 ttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctg 45282881  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 45271009 - 45271107
Alignment:
Q  9 tttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctg 107  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45271009 tttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctg 45271107  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 45274543 - 45274632
Alignment:
Q  10 ttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  45274543 ttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacaccagccttaacgtagataa 45274632  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 45294177 - 45294269
Alignment:
Q  15 gggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctg 107  Q
    |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || |||||||||||||||  |||||||    
T  45294177 gggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatagtatatctg 45294269  T

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Target: chr7; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 45303137 - 45303229
Alignment:
Q  15 gggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctg 107  Q
    |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || |||||||||||||||  |||||||    
T  45303137 gggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatagtatatctg 45303229  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 38583244 - 38583284
Alignment:
Q  66 tattcgtcatagacaccggccttaacgtagataacatatct 106  Q
    ||||||||||||||||| ||||| |||||||| ||||||||    
T  38583244 tattcgtcatagacaccagccttgacgtagatgacatatct 38583284  T

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