View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-17 (Length: 291)
Name: NF0440-8F-Insertion-17
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-17 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 83 - 291
Target Start/End: Complemental strand, 35867814 - 35867606
Alignment:
| Q |
83 |
caagcaattattttcttcaccttatagcaacacattcaaatttctttgaacaatttcataatcttcatagctagaaacaaacaatgttttactcacatca |
182 |
Q |
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| T |
35867814 |
caagcaattattttcttcaccttataacaacacattcaaatttctttgaacaatttcaaaatcttcatagctagaaacaaacaatgttttactcacatca |
35867715 |
T |
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| Q |
183 |
gcttcttgctagaaaagcacctctcggtcaaatttggtaccaacgtttcctgcatttcatcttaatttcatttgagtttgagtttggttacactacatac |
282 |
Q |
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| T |
35867714 |
gcttcttgctagaaaagcacctctcggtcaaatttggtaccaacgtttcctgcatttcatcttaatttcattttcatttgagtttggttacactacatac |
35867615 |
T |
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| Q |
283 |
attttaatc |
291 |
Q |
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| T |
35867614 |
attttaatc |
35867606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 34817685 - 34817550
Alignment:
| Q |
92 |
attttcttcaccttatagcaacacattcaaatttctttgaacaatttcataatcttcatagct------agaaacaaacaatgttttactcacatcagct |
185 |
Q |
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|||||||||||||| || ||||| |||||||||||| |||| |||||| ||| ||||| | ||||| |||||||||| || ||||| ||||| |
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| T |
34817685 |
attttcttcaccttgtaacaacaaattcaaatttctcataacattttcatcttctccatagtttctagaagaaataaacaatgttctattcacaccagct |
34817586 |
T |
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| Q |
186 |
tcttgctagaaaagcacctctcggtcaaatttggta |
221 |
Q |
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| T |
34817585 |
tctagctcgcaaagcacctctcggtcaaatttggta |
34817550 |
T |
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