View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-22 (Length: 192)
Name: NF0440-8F-Insertion-22
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 44256750 - 44256565
Alignment:
| Q |
8 |
agcaccgagaaacttgc-cgtaccgccgtgagtaattgtctccaccgttacattcgtctcaaaactcattctcttgctgaacatattagagagtttgctg |
106 |
Q |
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| T |
44256750 |
agcaccgagaaacttgctcgtgccgccgtgagtaattgtctccaccgttacattcgtctcaaaactcattctcttgctgaacatattagagagtttgctg |
44256651 |
T |
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| Q |
107 |
ccgcggttgagcaagagaagggtcgtgctattgttttgtatggtggagcagttaaagcgccgaagattcttgctgatgttgttgag |
192 |
Q |
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| T |
44256650 |
ccgcggttgagcaagagaagggtcgtgctattgttttgtatggtggagcagttaaagcgccgaaggttcttgctgatgttgttgag |
44256565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 20473244 - 20473144
Alignment:
| Q |
91 |
attagagagtttgctgccgcggttgagcaagagaagggtcgtgctattgttttgtatggtggagcagttaaagcgccgaagattcttgctgatgttgttg |
190 |
Q |
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| T |
20473244 |
attagtgagtttgctgatgcggttgaacgtgagaaagattgtgctgttgttttgtatggtggttcggttaaagccccgaagattcttgctgatgttgttg |
20473145 |
T |
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| Q |
191 |
a |
191 |
Q |
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| T |
20473144 |
a |
20473144 |
T |
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