View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-4 (Length: 710)
Name: NF0440-8F-Insertion-4
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 8 - 705
Target Start/End: Complemental strand, 16153891 - 16153198
Alignment:
| Q |
8 |
aaaatctctcaagttgttttcttgcaattttccggaaaatgagttgatgaagttccatgcactcaaagaagtttctttaggttggatggaattgaaaaac |
107 |
Q |
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| T |
16153891 |
aaaatctctcaagttgttttcttgcaattttccggaaaatgagttgatgaagttccatgcactcaaagaagtttctttaggttggatggaattgaaaaac |
16153792 |
T |
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| Q |
108 |
aacgcaatcgaaactcttttatcgaattgcaagatgattgagattttaaacatnnnnnnntgttggacatggaatagaattgattgtgttggagttgatg |
207 |
Q |
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| T |
16153791 |
aacgcaatcgaaactcttttatccaattgcaagatgattgagattttaaacataaaaaaatgttggacatggaatagaattgattgtgttggagttgatg |
16153692 |
T |
|
| Q |
208 |
aattacgtttgaaaaagctcattgttgatagttgcttttttatggagggtggatttttaatcgatgcacctaatttaacttatttcaagttttatgggaa |
307 |
Q |
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| T |
16153691 |
aattacgtttgaaaaagctcattgttgatagttgcttttttatggagggtggttttttaatcgatgcgccgaatttaacttatttcaagtttcatgggaa |
16153592 |
T |
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| Q |
308 |
tattatgtattttgatatagattattcctcacacttggaagaggttgatctatactttggccttgaatacgaaaaccctaaagaagatgtctttatttac |
407 |
Q |
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| T |
16153591 |
tattatgtattttgatatagattattcctcacacttggaagaggttgatctatactttggccttgaatacgaaaaccctaaagaagatgtctttatttac |
16153492 |
T |
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| Q |
408 |
agcaccattagaaatttcaaatatgttaaggttctcaccatctgcggtttcattctcaaggtaatacaaatttccg---ttcannnnnnnctatattaat |
504 |
Q |
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| T |
16153491 |
agcaccattagaaatttcaaatatgttaaggttctcaccatctgcggtttcattctcaaggtaatacaaatttctgttttttttttttttctgtatgaat |
16153392 |
T |
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| Q |
505 |
tttgttatagagttttagatatatatactagaagtgcaagtgaaaacaannnnnnnnnngttactacattgtatgcaatgatgagcttggctaaatgaaa |
604 |
Q |
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| T |
16153391 |
tttgttatagagttttagatatatatactagaagtgcaagtgaaaacaa-tttttttttgttactacattgtatgcattgatgagcttggctaaatgcaa |
16153293 |
T |
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| Q |
605 |
tttttgtaccaaaatatgaacaaaaacattagaattaataacacttaccttgagggagttattatttttctaaaacaattggagtaaatttattccacat |
704 |
Q |
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| T |
16153292 |
tttttgtaccaaaatatga--caaaacattagaattaataacacttaccttga-ggagttatta-ttttct-aaacaatt-gagtaaatttattcaacat |
16153199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 18463137 - 18463194
Alignment:
| Q |
49 |
agttgatgaagttccatgcactcaaagaagtttctttaggttggatggaattgaaaaa |
106 |
Q |
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| T |
18463137 |
agttgatcaagttacatgctctcaaagaagtttattttgcttggatggaattgaaaaa |
18463194 |
T |
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