View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-5 (Length: 608)
Name: NF0440-8F-Insertion-5
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 7 - 608
Target Start/End: Original strand, 41989990 - 41990597
Alignment:
| Q |
7 |
acttaggactttataatcacaatgttttattgataatcttgaaaatcgaaccgagaccgccacttgttgaa-taacattaattttcatattaaaattaag |
105 |
Q |
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| T |
41989990 |
acttaggactttataatcacaatgttttattgataatcttgaaaatcgaaccgagaccgccacttgttgaaataacattaattttcatattaaaattaag |
41990089 |
T |
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| Q |
106 |
actccacatttcttttaatattgcacgatcttgatattctttgttggagaaagtaacgaaataataatcattgctcagatcaacaatgttgatttctcca |
205 |
Q |
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| T |
41990090 |
actccacatttcttctaatattgcacgatcttgatattctttgttggagaaagtaacaaaataataatcattgctcagatcaacaatgttgatttctcca |
41990189 |
T |
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| Q |
206 |
tctctcacccgcatttgcttcaatcttgtcttcaagctttgcacgaatattttgccctaacatcttcatgatcactcctttcttccagggccgaaaaaat |
305 |
Q |
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| T |
41990190 |
tttctcacccacatttgcttcaatcttgtcttcaagctttgcacgaatattttg-cctaacatcttcatgatcactcctttcttccagggccg-aaaaat |
41990287 |
T |
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| Q |
306 |
actcttattttctttattcgataacaaaaaatcaggacatttgtacttgccattcatagattattcaatattgatatc-------ttcaccttcctcctt |
398 |
Q |
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| T |
41990288 |
tctcttattttctttattcgataacaaaaaatcaggacatttgtacttgccattcatagattattcaatattgatatctgcacctttctccttcctcctt |
41990387 |
T |
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| Q |
399 |
tcagcaatgacacctcctcctcgttagaccaatcaaaatcatccacaaaattgatttcaactgtcgaaaaccgtctccttgaaaaacccacccccatatc |
498 |
Q |
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| T |
41990388 |
tcaacaatgacacctcctcctcgttagaccaatcaaaatcatccacaaaattaatttcaattgtcgaaaaccgtctccttaaaaaacccacccccatatc |
41990487 |
T |
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| Q |
499 |
ttatttccatccatctccatgctctcatccccaccactcgtctttgtcgatagtgatacatgttcaacaaatgggtgttctccatgctacactctttcaa |
598 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41990488 |
ttatttccatccatctccatgctctcatccccaccacccgtctttgtcgatagtgatacatgttcaacaaatgggtgttctccatgctacactctttcaa |
41990587 |
T |
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| Q |
599 |
atcttcttca |
608 |
Q |
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| T |
41990588 |
atcttcttca |
41990597 |
T |
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