View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-6 (Length: 590)
Name: NF0440-8F-Insertion-6
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Original strand, 44460792 - 44461357
Alignment:
| Q |
7 |
aaacaattccaatcaataaaggggttttgtgttgaaactgaaatcagaactaactacagagaaaggaaagagctgaacgtgttcctaaccagggaaaata |
106 |
Q |
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| T |
44460792 |
aaacaattccaatcaataaaggggttttgtgttgaaactgaaatcagaactaactacagagaaaggaaagagctgaatgtgttcctaaccagggaaaata |
44460891 |
T |
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| Q |
107 |
acacttagcccaagctaaaagctaaaataaaactgaacaggatatcccactcctattctgttacatttctgtctgtaccttgtatggtctctttcatcta |
206 |
Q |
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| T |
44460892 |
acacttagctcaagctaaaagctaaaataaaactgaacaggatatcccactcctattctgttacatttctgtctgtaccttgtatggtctctttcatcta |
44460991 |
T |
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| Q |
207 |
tattctctttctgtaactaaccttatctctacaccagcatctattatttggtcaatccctcgacacctacatgttttcttcctgattgcagttaatcttt |
306 |
Q |
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| T |
44460992 |
tactctctttctgtaactaaccttatctctacaccagcatctattatttggtcaatccctcgacacctacatgttttcttcctgattgcagttaatcttt |
44461091 |
T |
|
| Q |
307 |
agtgggccagggttgcaggtttaaacatgcaagccttcttcatcttggacccgacctgtactgtatttgagtctatggtatggtcctattagaaaaccat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44461092 |
agtgggccagggttgcaggtttaaacatgcaagccttcttcatcttggacccgacctgtactgtatttgagtctatggtatggt----------aaccat |
44461181 |
T |
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| Q |
407 |
agaacacaatgagtatgaaatgtacctttcatagttgcatatcctgtggtttattcaagtgtgatgttgtaaaccattgatatttatttgctaaaattta |
506 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44461182 |
agaacacaatgagtatgaaatgtacctttcatacttgcatatcctgtggtttattcaagtgtgatgttgtaaaccattgatatttatttgctaaaattta |
44461281 |
T |
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| Q |
507 |
gtatactgnnnnnnnagaagacggtgtatttcggctcgactaaattgcatccatcgttcgtcaattcccaatcctatg |
584 |
Q |
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| T |
44461282 |
gtatactgtttttttagaagacggtgtatttcggctcgact-aattgcatctatcgttcgtctatt-ccaatcctatg |
44461357 |
T |
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