View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-8F-Insertion-8 (Length: 546)
Name: NF0440-8F-Insertion-8
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Original strand, 36357716 - 36358204
Alignment:
| Q |
7 |
aggattgtcgaaggtgcttaattaatcttagaatttagaccgaacttaattcaaatgttacaaaacataagatgaaaaccgtccgcaacttataaacata |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36357716 |
aggattgtcgaaggtgcttaattaatcttagaatttagaccgaacttaattcaaatgttacaaaacataagatgagaaccgtccgcaacttataaacata |
36357815 |
T |
|
| Q |
107 |
ttttcaaactatatctcgtccaatatgaaacttgtcaacataaatatattcaaagtatgagaaaatattactgattatgtcaactgaagtacggccattg |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36357816 |
ttttcaaactatatctcgtccaatataaaacttgtcaacataaatatattcaaagtgtgagaaaatattactgattatgtcaattgaagtacggccattg |
36357915 |
T |
|
| Q |
207 |
gtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgata |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36357916 |
gtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgtctgata |
36358015 |
T |
|
| Q |
307 |
aagaatctccaaaaatgaaaagacatggtacttggggcttcccaacaacacaatatgttgcacttgagaagaagaaaaacaccatccataacttagtctt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36358016 |
aagaatctccaaaaatgaaaagacatggtacttggggcttcccaacaacacaatatgttgcacttgagaagaagaaaaacaccatccataacttagtctt |
36358115 |
T |
|
| Q |
407 |
atgatccatatcnnnnnnnnnnnntgtcaaaagtttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagctaa |
495 |
Q |
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| T |
36358116 |
atgatccatatcaaaaagaaaaaatgtcaaaagtttgttctgatccaaaatatttggaatccaagcacaagatttgcaggtgtagctaa |
36358204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 545
Target Start/End: Original strand, 36358219 - 36358250
Alignment:
| Q |
514 |
agagatgaaagacaaaaatttgtatgaccttg |
545 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
36358219 |
agagatgaaagacaaaaatttgtatgaccttg |
36358250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 5573428 - 5573573
Alignment:
| Q |
174 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
273 |
Q |
| |
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||||| |||||||||| || ||| | || ||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||| ||| ||| || |
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| T |
5573428 |
ttacttattatgtcaattgcagttctaccgttggtaaatcttccggttggacccatcggaaagtcaattccataaggtttgtaattagattttgcagagg |
5573527 |
T |
|
| Q |
274 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaa |
319 |
Q |
| |
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||| |||||||||||||||||||| || ||||||||||||||||| |
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| T |
5573528 |
taggaaggttattgttgtttccactatcagataaagaatctccaaa |
5573573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 175 - 342
Target Start/End: Original strand, 5576591 - 5576758
Alignment:
| Q |
175 |
tactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggt |
274 |
Q |
| |
|
|||| |||||||||| |||||| || || ||||||||||||||||| || || || || ||||| |||||||| |||||||| ||| ||| ||| |
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| T |
5576591 |
tacttattatgtcaattgaagttcgaccgttggtaaatcttccggttgggcccatcgggaagtcaattccataaggtttgtaattagattttgcagaggt |
5576690 |
T |
|
| Q |
275 |
agctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
342 |
Q |
| |
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| ||||| || ||||||||||| || ||||||||||||||||| || ||||||||||| ||||||| |
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| T |
5576691 |
gggaaggttgttattgtttccactatcagataaagaatctccaaagataaaaagacatggcacttggg |
5576758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 342
Target Start/End: Original strand, 5586959 - 5587127
Alignment:
| Q |
174 |
ttactgattatgtcaactgaagtacggccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcgg |
273 |
Q |
| |
|
|||||||||||||||| |||||| || || |||||||||||||| || || || ||||| || || ||||| || |||||||| ||| ||| || |
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|
| T |
5586959 |
ttactgattatgtcaattgaagttcgaccgttggtaaatcttccagttgggcccatcggaaagtcgattccatagggattgtaattagattttgcagagg |
5587058 |
T |
|
| Q |
274 |
tagctaggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
342 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||| |||||||| || || ||||| || ||||||| |
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|
| T |
5587059 |
taggaaggttattgttgtttccactatcagataaagagtctccaaagataaatagacaaggcacttggg |
5587127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 5593300 - 5593363
Alignment:
| Q |
279 |
aggttattgttgtttccactgtctgataaagaatctccaaaaatgaaaagacatggtacttggg |
342 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||||||||| || |||||||| || ||||||| |
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|
| T |
5593300 |
aggttgttgttgtttccaccatcagataaagaatctccaaagataaaaagacaaggaacttggg |
5593363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 340
Target Start/End: Original strand, 7017571 - 7017710
Alignment:
| Q |
201 |
ccattggtaaatcttccggtaggaccagctggaaaatcaatcccataaggcctgtaattaactttggcatcggtagctaggttattgttgtttccactgt |
300 |
Q |
| |
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||||| ||||| ||||| || ||||| | |||||||| || ||||| || ||||||||||||| ||| ||| | || | ||||||||||||||||| |
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| T |
7017571 |
ccattagtaaaccttcctgttggacctgtcggaaaatcgatgccatatggtttgtaattaacttttgcagttgtaacaagatcattgttgtttccactgt |
7017670 |
T |
|
| Q |
301 |
ctgataaagaatctccaaaaatgaaaagacatggtacttg |
340 |
Q |
| |
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| T |
7017671 |
cagataaagagtcaccaaaaacaaaaagacaaggcacttg |
7017710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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