View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0440-8F-Insertion-9 (Length: 521)
Name: NF0440-8F-Insertion-9
Description: NF440-8F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-8F-Insertion-9 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 6 - 521
Target Start/End: Original strand, 13036443 - 13036956
Alignment:
| Q |
6 |
caaattcatctagttactcactcatcaccaaacatctatgaagcacccttgtctcctgtataagatgctcaataatcaactttgctcgctgctcaatatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13036443 |
caaattcatctagttactcactcatcaccaaacatctatgaagcacccttgtctcctgtataagatgctcaataatcaactttgctcgctgctcaatatc |
13036542 |
T |
|
| Q |
106 |
ctcagttagcttataacaaggtgttgctcctccaaggccctctaactctccatattggatctagattcgggagcttcatatcatgttataactaacccaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13036543 |
ctcagttagcttataacaaggtgttgctcctccaaggccctctaactctccgtattggatctagattcgggagcttcatatcatgttataactaacccaa |
13036642 |
T |
|
| Q |
206 |
aagcgtaatgctcaagtccatatgtagcactagtcctgtgagccaaagttccaacagttgcattctacgatgcttcacttggcctttttctgatcaatcc |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13036643 |
aagcgtaatgctcaagtccatacgtagcactagtcctgtgagccaaagttccaacagttgcattctacgatgcttcacttggcctttttctgatcaatcc |
13036742 |
T |
|
| Q |
306 |
ctccgaatgaagtgtgatttaagattcatttattttaacttgttgaaccatctgaaccttagacaagataatcgtaacttaactagaaatacgataactt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13036743 |
ctccgaatgaagtgtgatttaagattcatttattttaacttgttgaaccatctgaaccttagacaagataatcgtaatttaactagaaatacgataactt |
13036842 |
T |
|
| Q |
406 |
agctggggatacacagtaaaggcttcatagttattgatttttacttgctttatcatgtttttcttcttcttttcctttgatttatgtaaatcctttctct |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
13036843 |
agctggggatacacagtaaaggcttcatagttattgatttttacttgctttatcatgtttt--tttttcttttcctttgatttatgtaaatcctttctct |
13036940 |
T |
|
| Q |
506 |
gtaaattttgtattgt |
521 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13036941 |
gtaaattttgtattgt |
13036956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University