View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0440-Insertion-1 (Length: 1054)
Name: NF0440-Insertion-1
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 771; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 7 - 816
Target Start/End: Complemental strand, 52263109 - 52262300
Alignment:
| Q |
7 |
atttggagacttgccacaggtgatccttataggcttgtttcagaacgatttggtttgggtttatccacatgtcacaagctcgttctagatgtttgctctg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263109 |
atttggagacttgccacaggtgatccttataggcttgtttcagaacgatttggtttgggtttatccacatgtcacaagctcgttctagatgtttgctctg |
52263010 |
T |
|
| Q |
107 |
caataaaaaccgttcttatgccaaagttcattctatggccagatgaaaataacatgatattggttaaacaagagtttgagggtctttctggaataccaaa |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263009 |
aaataaaaaccgttcttatgccaaagttcattctatggccagatgaaaataacatgatattggttaaacaagagtttgagggtctttctggaataccaaa |
52262910 |
T |
|
| Q |
207 |
tgttggtggttcagtttatactactcatattcccataattgcaccgaactccaatgcgaattcttattatttcaataaaagacacactcagaggaacaag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262909 |
tgttggtggttcagtttatactactcatattcccataattgcacctaactccaatgtgaattcttattatttcaataaaagacacactcagaggaacaag |
52262810 |
T |
|
| Q |
307 |
aaaaattcttactcttttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacagg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52262809 |
aaaaattcttactcttttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaatagg |
52262710 |
T |
|
| Q |
407 |
ttttcgagaaatcggatttgtttaagagaattgtgaagggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaatttt |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262709 |
ttttcgagaaatcggatttgtttaagagaattgtgaagggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaatttt |
52262610 |
T |
|
| Q |
507 |
ggttccttatgcacataagaatcttacttggacgcagcacgcgtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctg |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52262609 |
ggttccttatgcacataagaatcttacttggacgcagcacgcgtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctg |
52262510 |
T |
|
| Q |
607 |
aaagggaggtggtcctgtttgcagaagaggacagaggtg-aaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgaga |
705 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52262509 |
aaagggaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgaga |
52262410 |
T |
|
| Q |
706 |
tgagaaatgagaagatggatcctggatggaattttgaattgtttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctag |
805 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262409 |
tgagaaatgagaagatggat-ctggatggaattttgaattgtttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctag |
52262311 |
T |
|
| Q |
806 |
ggataatattg |
816 |
Q |
| |
|
||||||||||| |
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|
| T |
52262310 |
ggataatattg |
52262300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 885
Target Start/End: Complemental strand, 52251461 - 52250584
Alignment:
| Q |
10 |
tggagacttgccacaggtgatccttataggcttgtttcagaacgatttggtttgggtttatccacatgtcacaagctcgttctagatgtttgctctgcaa |
109 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||| |||||| | | || ||||||||| ||||||| ||||| ||||| ||||| || ||||| |||||| |
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| T |
52251461 |
tggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagctggttcttgaggtttgtgctgcaa |
52251362 |
T |
|
| Q |
110 |
taaaaaccgttcttatgccaaagttcattctatggccagatgaaaataacatgatattggttaaacaagagtttgagggtctttctggaataccaaatgt |
209 |
Q |
| |
|
| || | ||||||||||||||||| ||| ||||| ||||||||||| |||| ||| |||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
52251361 |
tcaagaaagttcttatgccaaagtttattacttggcctgatgaaaataagatgaatttgattaaacaagagtttgagggtctttttggaatgccaaatgt |
52251262 |
T |
|
| Q |
210 |
tggtggttcagtttatactactcatattcccataattgcaccgaactccaatgcgaattcttattatttcaataaaagacacactcagaggaacaagaaa |
309 |
Q |
| |
|
|||||||||| | ||||| || |||||||| ||||||||||| || ||||| ||||||||||| ||||||| || || |||||||||||| ||||| |
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|
| T |
52251261 |
tggtggttcaatgtataccacacatattccaataattgcacctaagaacaatgtgaattcttatt---tcaataagaggcagactcagaggaaccagaaa |
52251165 |
T |
|
| Q |
310 |
aattcttactcttttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttt |
409 |
Q |
| |
|
| | | |||||| |||||||||| ||||||||||| |||||||| |||||||| | || | | |||||| |||||||||||| |||||| || |||| |
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|
| T |
52251164 |
actgcatactctgttactgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctggttcttataatgatgatcaagttt |
52251065 |
T |
|
| Q |
410 |
tcgagaaatcggatttgtttaagagaattgtga-agggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttgg |
508 |
Q |
| |
|
| |||||||| | ||| | ||||| | ||| ||||| ||||||||||| ||||||||| |||||||||||||| |||||| ||||||| |||||||| |
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|
| T |
52251064 |
tggagaaatctgtaatgtatcagagagctatgacaggga-atttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttgg |
52250966 |
T |
|
| Q |
509 |
ttccttatgcacataagaatcttacttggacgcagcacgcgtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaa |
608 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||||||||||| || || |||||||||| | | ||| ||||| ||||||| | |||| |
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|
| T |
52250965 |
ttccttatacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaa |
52250866 |
T |
|
| Q |
609 |
agggaggtggtcctgtttgcagaagaggacagaggtgaa-attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatg |
707 |
Q |
| |
|
||| |||||||| |||||||||||||||| ||||||||| |||||||| |||||| || | |||||||||||||||||||||||||||||||| ||| |
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|
| T |
52250865 |
aggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatg |
52250766 |
T |
|
| Q |
708 |
agaaatgagaagatggatcctggatggaattttgaattgtttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctaggg |
807 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||||||| |
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|
| T |
52250765 |
aggaatgagaagatggatcctgcatggaattttgaactttttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaagctaggg |
52250666 |
T |
|
| Q |
808 |
ataatattgctcatgacttgttgcatcgtggccgtgctggcaatacttttctatagg----tttatgttttctgttatgtca |
885 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||||||||||| |||| | ||||||||||||||||||||| |
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|
| T |
52250665 |
ataatattgctcatgatttgttgcatcgtggtcgtgttggcaatacttttttataagtttttttatgttttctgttatgtca |
52250584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 872 - 966
Target Start/End: Complemental strand, 52262277 - 52262181
Alignment:
| Q |
872 |
tttctgttatgtcaa-tgatttcaatattttagctatgacttattactagtcattcatattagagaagaac-agactatattgtgtggatctattgt |
966 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
52262277 |
tttctattatgtcaaatgatttcaatattttagctatgacttattactagtcattcatattagagaagaacaagactatattgtgtggatctattgt |
52262181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1009 - 1054
Target Start/End: Complemental strand, 52262173 - 52262128
Alignment:
| Q |
1009 |
tagtttatttgatggagagatcagtttacaagggcgcggatttgaa |
1054 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
52262173 |
tagtttatttgatggagacatctgtttacaagggcgcggatttgaa |
52262128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 581 - 729
Target Start/End: Original strand, 3698843 - 3698992
Alignment:
| Q |
581 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaattg-aggatttgcctaagattttaggtgcttg |
679 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| | | ||||||||| | | |||||||| |
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|
| T |
3698843 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttg |
3698942 |
T |
|
| Q |
680 |
ttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctg |
729 |
Q |
| |
|
||||||||||||||| ||||||||||||| | |||||| |||||||||| |
|
|
| T |
3698943 |
ttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctg |
3698992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 581 - 729
Target Start/End: Original strand, 3702531 - 3702680
Alignment:
| Q |
581 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaa-ttgaggatttgcctaa-gattttaggtgctt |
678 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| || | ||||||||| || || | ||||| |
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|
| T |
3702531 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
3702629 |
T |
|
| Q |
679 |
gttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctg |
729 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | |||||| |||||||||| |
|
|
| T |
3702630 |
gttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctg |
3702680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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