View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-Insertion-11 (Length: 181)
Name: NF0440-Insertion-11
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-Insertion-11 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 4e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 4e-92
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 14722224 - 14722398
Alignment:
| Q |
7 |
aattcctacatgttagaataagaatgcgcattggtatgattcccagacaataaagtgttagaacaccctaagttagcagtggtcttcgaattaactttga |
106 |
Q |
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| T |
14722224 |
aattcctacatgttagaataagaatgcgcattggtatgattcccagacaataaagtgttagaacaccctaagttagcagtggtcttcgaattaactttga |
14722323 |
T |
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| Q |
107 |
caccattaaataatagcttgtttctacattaccatatgatatttatcacattgataatggctgaatgaccaccac |
181 |
Q |
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| T |
14722324 |
caccattaaataattgcttgtttctacattaccatatgatatttatcacattgataatggctgaatgaccaccac |
14722398 |
T |
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Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 17601967 - 17601794
Alignment:
| Q |
7 |
aattcctacatgttagaataagaatgcgcattggtatgattcccagacaataaagtgttagaacaccctaagttagcagtggtcttcgaattaactttga |
106 |
Q |
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| T |
17601967 |
aattcctacatgttagaataagaatgtgcattggtatgat-cccagacaataaagtgttagaacaccctaagttagcagtggtcttcgaattaactttga |
17601869 |
T |
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| Q |
107 |
caccattaaataatagcttgtttctacattaccatatgatatttatcacattgataatggctgaatgaccaccac |
181 |
Q |
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| T |
17601868 |
aaccattaaataattgcttgtttctacattaccatatgatatttatcacattgataatggctgaatgaccaccac |
17601794 |
T |
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