View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0440-Insertion-2 (Length: 857)
Name: NF0440-Insertion-2
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-Insertion-2 |
 | |
|
| [»] chr7 (10 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0031 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0173 (1 HSPs) |
| | |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 576; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 7 - 630
Target Start/End: Original strand, 33343567 - 33344194
Alignment:
| Q |
7 |
agtttcctcaacaggtaacaattgttatgcagatgacagaagaaaaactcttttggcacgttaaacaagctctttttaacaaaaaggagtacttaatata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33343567 |
agtttcctcaacaggtaacaattgttatgcagatgacagatgaaaaactcttttggtacgttaaacaagctctttttaacaaaaaggagtacctaatata |
33343666 |
T |
|
| Q |
107 |
taggaaatgataggagtcttcaacaagaattgcactatcaattactcagcatacagaaacatttttcccatatgggctcttggtga---atatcgaagtc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33343667 |
taggaaatgataggagtcttcaacaagaattgcactatcaattactcagcatgcagaaacatttttcccatatgggctcttggtgatcaatatcgaagtc |
33343766 |
T |
|
| Q |
204 |
gagtactcctttaatttatcccgacaaagagtccagagaaattgcatcataatcaggttataaacaaatgtctatattaattgttttccttgtcataaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343767 |
gagtactcctttaatttatcccgacaaagagtccagagaaattgcatcataatcaggttataaacaaatgtctatattaattgttttccttgtcataaag |
33343866 |
T |
|
| Q |
304 |
taattcacttgaatcctcttatatttaactaatctcataccttttcagctacaaaactgtcagcaaatggagcaggaggcaaaacaaagtgcactaagtt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343867 |
taattcacttgaatcctcttatatttaactaatctcataccttttcagctacaaaactgccagcaaatggagcaggaggcaaaacaaagtgcactaagtt |
33343966 |
T |
|
| Q |
404 |
tcaaactttatgttgaatacatgtgacaatgtcaattgcaatttaaatgatacaaaaaattggaccctactacaagaattcctcaaacatttaatcaatt |
503 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343967 |
tcaaactttatgttgaatacatgtgac-atgtcaattgcaatttaaatgatacaaaaaattggaccctactacaagaattcctcaaacatttaatcaatt |
33344065 |
T |
|
| Q |
504 |
tgctgttgtcatttctccatcaatcaatcaattcaataaatggctacaactttcacgcaaaacaaaagtaatcctcgttggttatttcagttagcctagt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33344066 |
tgctgttgtcatttctccatcaatcaatcaattcaataaatggctacaactttcacgcaaaacaaaagtaatcctcgttggttatttcagttagcctagt |
33344165 |
T |
|
| Q |
604 |
tacttgta--ttttttttggtaaaatgac |
630 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
33344166 |
tacttgtattttttttttggtaaaatgac |
33344194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 7 - 619
Target Start/End: Complemental strand, 35123335 - 35122721
Alignment:
| Q |
7 |
agtttcctcaacaggtaacaattgttatgcagatgacagaagaaaaactcttttggcacgttaaacaagctctttttaacaaaaaggagtacttaatata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35123335 |
agtttcctcaacaggtaacaattgttatgcagatgacagaagaaaaactcttttggtacgttaaacaagctctttttaacaaaaaggagtacctaatata |
35123236 |
T |
|
| Q |
107 |
taggaaatgataggagtcttcaacaagaattgcactatcaattactcagcatacagaaacatttttcccatatgggctcttggtga---atatcgaagtc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35123235 |
taggaaatgataggagtcttcaacaagaattgcactatcaattactcagcatgcagaaacatttttcccatatgggctcttggtgatcaatatcgaagtc |
35123136 |
T |
|
| Q |
204 |
gagtactcctttaatttatcccgacaaagagtccagagaaattgcatcataatcaggttataaacaaatgtctatattaattgttttccttgtcataaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35123135 |
gagtactcctttaatttatcccgacaaagagtccagagaaattgcatcataatcaggttataaacaaatgtctatattaattgttttccttgtcataaag |
35123036 |
T |
|
| Q |
304 |
taattcacttgaatcctcttatatttaactaatctcataccttttcagctacaaaactgtcagcaaatggagcaggaggcaaaacaaagtgcactaagtt |
403 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35123035 |
taattcacatgaatcctcttatatttaactaatctcataccttttcagctacaaaactgccagcaaatggagcaggaggcaaaacaaagtgcactaagtt |
35122936 |
T |
|
| Q |
404 |
tcaaactttatgttgaatacatgtgacaatgtcaattgcaatttaaatgatacaaaaaattggaccctactacaagaattcctcaaacatttaatcaatt |
503 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35122935 |
tcaaactttatgttgaatacatgtgac-atgtcaattgcaatttaaatgatacaaaaaattggaccctactacaagaattcctcaaacatttaatcaatt |
35122837 |
T |
|
| Q |
504 |
tgctgttgtcatttctccatcaatcaatcaattcaataaatggctacaactttcacgcaaaacaaaagtaatcctcgttggttatttcagttagcctagt |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35122836 |
tgctgttgtcatttctccatcaatcaatcaattcaataaatggctacaactttcacgcaaaacaaaagtaatcctcgttggttatttcagttagcctagt |
35122737 |
T |
|
| Q |
604 |
tacttgtatttttttt |
619 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
35122736 |
tacttgtatttttttt |
35122721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 103 - 309
Target Start/End: Complemental strand, 34755300 - 34755094
Alignment:
| Q |
103 |
tatataggaaatgataggagtcttcaacaagaattgcactatcaattactcagcatacagaaacatttttcccatatgggctcttggtgaatatcgaagt |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755300 |
tatataggaaataataggagtcttcaacaaaaattgcactatcaattactcagcatacagaaacatttttcccatatgggctcttggtgaatatcgaagt |
34755201 |
T |
|
| Q |
203 |
cgagtactcctttaatttatcccgacaaagagtccagagaaattgcatcataatcaggttataaacaaatgtctatattaattgttttccttgtcataaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755200 |
cgagtactcctttaatttatcccgacaaagagtccagagaaattgcatcataatcaggttataaacaaatgtctatattaattgttttccttgtcataaa |
34755101 |
T |
|
| Q |
303 |
gtaattc |
309 |
Q |
| |
|
||||||| |
|
|
| T |
34755100 |
gtaattc |
34755094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 670 - 857
Target Start/End: Original strand, 33344227 - 33344414
Alignment:
| Q |
670 |
cagggttcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttg |
769 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33344227 |
cagggttcagcctggggcatcaagcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttg |
33344326 |
T |
|
| Q |
770 |
accaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33344327 |
accaagaaatatgcgcaatagttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
33344414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 670 - 857
Target Start/End: Complemental strand, 35122665 - 35122478
Alignment:
| Q |
670 |
cagggttcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttg |
769 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35122665 |
cagggttcagcctggggcatcaagcctcaagactgacttcaactctgatggaggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttg |
35122566 |
T |
|
| Q |
770 |
accaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35122565 |
accaagaaatatgcgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
35122478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 707 - 857
Target Start/End: Original strand, 13419209 - 13419359
Alignment:
| Q |
707 |
ttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttgccctctcgaagca |
806 |
Q |
| |
|
|||||||| |||| ||| ||||| ||||| ||||||| || |||||||||||||| | |||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
13419209 |
ttcaactctgatgagggggcatgtcaaaaagtcacacctagtcttgaagagcgtctaagcttggccaagaaatatgtgcaataattgccctctcgaagca |
13419308 |
T |
|
| Q |
807 |
catgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
|||||| |||||| ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
13419309 |
catgttcgaaagagatgttgggaatatgctcctttaacccaaaaatcttca |
13419359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 34755375 - 34755313
Alignment:
| Q |
46 |
aagaaaaactcttttggcacgttaaacaagctctttttaacaaaaaggagtacttaatatata |
108 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
34755375 |
aagaaaatctcttttggtatgttaaacaagctctttttaacaaaaagaagtacctaatatata |
34755313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 34755434 - 34755398
Alignment:
| Q |
129 |
acaagaattgcactatcaattactcagcatacagaaa |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755434 |
acaagaattgcactatcaattactcagcatacagaaa |
34755398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 790 - 857
Target Start/End: Complemental strand, 2805411 - 2805344
Alignment:
| Q |
790 |
gttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
|||| |||||| ||| ||||| | ||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
2805411 |
gttgtcctctctaagaacatgatggaaagaaatgttagcaatatactcctttaaaccaaaaatcttca |
2805344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 1e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 670 - 853
Target Start/End: Original strand, 35892075 - 35892258
Alignment:
| Q |
670 |
cagggttcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttg |
769 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||| |||| |
|
|
| T |
35892075 |
cagggctcagcctggggcatcaagcctcaagactgacttcaactctgatgggggagcatgccaaaaagtcacatctaatcttgaagagcgcccgagcttg |
35892174 |
T |
|
| Q |
770 |
accaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatc |
853 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35892175 |
gccaagaaatatgcgcaatggttgccctctcggagcacatgttggaaagaaatgttacgaatatgctcctttaacccaaaaatc |
35892258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 671 - 852
Target Start/End: Original strand, 35147754 - 35147934
Alignment:
| Q |
671 |
agggttcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttga |
770 |
Q |
| |
|
||||||||| |||||||||| | || || |||||||| || |||||||| ||||| || ||||| ||| ||| ||||||||| ||| || || | ||| |
|
|
| T |
35147754 |
agggttcagtctggggcatcaagtcttaacactgactttaattccgatggaggagcctgtcaaaaggtctcacctaatcttgacgagtgttcggatttgg |
35147853 |
T |
|
| Q |
771 |
ccaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaat |
852 |
Q |
| |
|
|||||||||| ||||| | | ||||||| ||||||||||| |||| |||||||| |||||| ||| ||||| |||||||| |
|
|
| T |
35147854 |
acaagaaatatatgcaacgat-gccctctttaagcacatgttggaaataaatgttaggaatatgctcatttaaaccaaaaat |
35147934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 1932831 - 1932756
Alignment:
| Q |
108 |
aggaaatgataggagtcttcaacaagaattgcactatcaattactcagcatacagaaacatttttcccatatgggc |
183 |
Q |
| |
|
||||||| || |||||||||||||| ||||||| |||| ||| | |||||||||||||| || ||||||||||| |
|
|
| T |
1932831 |
aggaaataatgggagtcttcaacaaaaattgcatgatcacttatgctgcatacagaaacatattccccatatgggc |
1932756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 670 - 857
Target Start/End: Complemental strand, 15582499 - 15582312
Alignment:
| Q |
670 |
cagggttcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttg |
769 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| |||| |||| |
|
|
| T |
15582499 |
cagggctcagcctggggcatcaagcctcaagactgacttcaactccgatgggggaacatgccaaaaagtcacacctaatcttgaagagctcccgagcttg |
15582400 |
T |
|
| Q |
770 |
accaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
15582399 |
gccaaaaaatatgcgcaatggttgccctctcgaagcacatgttggagagaaatgttacaaatatgctcctttaacccaaaaatcttca |
15582312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 694 - 793
Target Start/End: Original strand, 2931093 - 2931192
Alignment:
| Q |
694 |
cctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttg |
793 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| | || ||||| ||||||| ||||||||||||||| |||||||||||||| |||| || |||||||||| |
|
|
| T |
2931093 |
cctcaatactgacttcaactctgatgggggaacgtgtcaaaaagtcacacctaatcttgaagagcgcccgaacttgaccaataaatctgcgcaatggttg |
2931192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 676 - 815
Target Start/End: Complemental strand, 34423352 - 34423213
Alignment:
| Q |
676 |
tcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaag |
775 |
Q |
| |
|
|||||||| ||||||| |||| || | |||||||||||| | |||||||| ||| |||| ||||||| |||| | ||||| ||||| | |||| | ||| |
|
|
| T |
34423352 |
tcagcatgaggcatcaagccttaacattgacttcaactctaacgggggagcctgctaaaaagtcacacctaatttcgaagaacgtccaagcttggcaaag |
34423253 |
T |
|
| Q |
776 |
aaatatgtgcaatggttgccctctcgaagcacatgttaga |
815 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34423252 |
aaatttgtgcaatggttgccctctcgaaacacatgttaga |
34423213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 22508796 - 22508890
Alignment:
| Q |
105 |
tataggaaatgataggagtcttcaacaagaattgcactatcaattactcagcatacagaaacatttttcccatatgggctcttggtgaatatcga |
199 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||| || ||| | ||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
22508796 |
tataggaaataatgggaatcttcaacaagaattgcactatcacttgctcgtcgtacagaagcatgtttcccatatgggctcttggtgaatatcga |
22508890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 684 - 844
Target Start/End: Original strand, 24565572 - 24565732
Alignment:
| Q |
684 |
gggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgt |
783 |
Q |
| |
|
|||||||| | ||||| |||| |||||| | ||||| |||| || ||||| ||||||| |||||||||| || | |||| || ||| ||||||| |
|
|
| T |
24565572 |
gggcatcaagtctcaacactgccttcaattatgatggaggagtctgtcaaaaagtcacacataatcttgaaaagtgaccgagattcgtcaaaaaatatgc |
24565671 |
T |
|
| Q |
784 |
gcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaac |
844 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
24565672 |
gcaatggtttcccactcgaagcacatgttagaaagaaatgttaggaatatgctcctttaac |
24565732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 682 - 857
Target Start/End: Complemental strand, 8063269 - 8063094
Alignment:
| Q |
682 |
tggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatat |
781 |
Q |
| |
|
|||||||| | |||| || ||||||| |||||| || || |||| || ||| ||||||||| ||| | |||||| | |||| ||| |||| |||| | |
|
|
| T |
8063269 |
tggggcattaagccttaacactgactccaactctgaaggaggagtctgtcaatatgtcacacctaaccatgaagatccgtcgaatttggccaaaaaattt |
8063170 |
T |
|
| Q |
782 |
gtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
|||||| ||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
8063169 |
gtgcaacagttttcctctctaagcacatgttggaaagaaatgttaggaatatgctcctttaaaccaaaaatcttca |
8063094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 730 - 799
Target Start/End: Original strand, 664476 - 664545
Alignment:
| Q |
730 |
ccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttgccctct |
799 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||| |||| |||||||||||| ||||| |||||||||| |
|
|
| T |
664476 |
ccaaaaagtcacacataatcttgaagagcgtccgagcttggccaagaaatatgcgcaatagttgccctct |
664545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 850
Target Start/End: Original strand, 29447322 - 29447486
Alignment:
| Q |
686 |
gcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatg-tcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtg |
784 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||| |||||| ||||| ||||| ||||||| ||||||| ||| || ||||||||| |||| |
|
|
| T |
29447322 |
gcatcaagtctcaacactgacttcaactccgatgggg-agcatgtcaaaaaaatcacatctaatcttatagagcgttcgagtctggccaagaaatgtgtg |
29447420 |
T |
|
| Q |
785 |
caatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaa |
850 |
Q |
| |
|
||| ||| |||||| |||||| |||| ||||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
29447421 |
caacagttaccctcttaaagcacctgtttgaaagaaatgttagaaatatgttcctttaactcaaaa |
29447486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 743
Target Start/End: Complemental strand, 1275917 - 1275858
Alignment:
| Q |
684 |
gggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacac |
743 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| | |||||||||| |||||||| ||||||| |
|
|
| T |
1275917 |
gggcatcaagcctcaacactgacttcaacttcaatgggggagcttgccaaaaagtcacac |
1275858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 797 - 857
Target Start/End: Complemental strand, 1275853 - 1275793
Alignment:
| Q |
797 |
tctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||||||| |||| |||| ||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
1275853 |
tctcgaagcacgtgttggaaaaaaacgttagaaatatgctcctttaacccaaaaatcttca |
1275793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 671 - 857
Target Start/End: Complemental strand, 6944988 - 6944802
Alignment:
| Q |
671 |
agggttcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttga |
770 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||| || |
|
|
| T |
6944988 |
agggctcagcttggggcatcaagcctcaagattgacttcaactccgatgggggagcatgccaaaaagtcacacctaatcttaaagagcgcccgaacatgg |
6944889 |
T |
|
| Q |
771 |
ccaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
6944888 |
ccaagaagtttgcgcaatggttgccctctcgaagcacatgttggaaagaaatgtcacgaacatgcttctttaacccaaaaatcttca |
6944802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 684 - 857
Target Start/End: Original strand, 1904585 - 1904758
Alignment:
| Q |
684 |
gggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaat-gtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatg |
782 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||||| |||||||||||| ||||||| | ||||||||||||| || | |||| ||||||||| | |
|
|
| T |
1904585 |
gggcatcaagcctcaagactgacttcaatttcgatgggg-agcatgccaaaaaagtcacacctgatcttgaagagcgcccaagcttggccaagaaatcta |
1904683 |
T |
|
| Q |
783 |
tgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| || |||||| |||| |
|
|
| T |
1904684 |
cgcaatggttgccctctcaaagcacatgttggaaagaaatgttacgaatatgctcctttatccaaaaaatattca |
1904758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 706 - 773
Target Start/End: Original strand, 13891937 - 13892004
Alignment:
| Q |
706 |
cttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgacca |
773 |
Q |
| |
|
|||||||||| | ||||||||| |||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
13891937 |
cttcaactccaaaaggggagcataccaaaagatcacacttagtcttgaagagcgcccgaacttgacca |
13892004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 706 - 773
Target Start/End: Original strand, 14032062 - 14032129
Alignment:
| Q |
706 |
cttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgacca |
773 |
Q |
| |
|
|||||||||| | ||||||||| |||||| ||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
14032062 |
cttcaactccaaaaggggagcataccaaaagatcacacttagtcttgaagagcgcccgaacttgacca |
14032129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 670 - 857
Target Start/End: Original strand, 24274761 - 24274949
Alignment:
| Q |
670 |
cagggttcagcatggggca-tcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaactt |
768 |
Q |
| |
|
||||| ||||||||||| | ||| ||||||||||| |||||||||| |||| |||||||||||||| ||||||| ||||||||||||||| | || || |
|
|
| T |
24274761 |
cagggctcagcatgggggaatcaagcctcaagactcacttcaactctaatggaggagcatgccaaaaagtcacacctaatcttgaagagcgcctgaggtt |
24274860 |
T |
|
| Q |
769 |
gaccaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24274861 |
gaccaagaaatttgcgcaatggttaccctctcgaagcacatgttggaaagaaatgttacgaatatgctcctttaacccaaaaatcttca |
24274949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 722 - 856
Target Start/End: Original strand, 28145205 - 28145339
Alignment:
| Q |
722 |
ggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaa |
821 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||| || | ||||| |||||||||||||||||| ||||||||| |||| ||||||| |||||||| |
|
|
| T |
28145205 |
ggagcatgccaaaaaatcacgcctaatcttgaagagcgccccagcttgatcaagaaatatgtgcaatgattgccctcttgaagtacatgttggaaagaaa |
28145304 |
T |
|
| Q |
822 |
tgttacgaatatactcctttaacccaaaaatcttc |
856 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
28145305 |
tgttaggaatatgctcctttaatccaaaaatcttc |
28145339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 857
Target Start/End: Original strand, 21688089 - 21688150
Alignment:
| Q |
796 |
ctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||| || |||||||| |||| |||||||| | |||| ||||||||| ||||||||||||| |
|
|
| T |
21688089 |
ctctctaaacacatgttggaaataaatgttagggatatgctcctttaaaccaaaaatcttca |
21688150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 5e-49; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 684 - 855
Target Start/End: Complemental strand, 26173859 - 26173688
Alignment:
| Q |
684 |
gggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgt |
783 |
Q |
| |
|
||||| || ||||||| | |||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
26173859 |
gggcaccaagcctcaacaatgactttaactccgatgggggagcctgccaaaaagtcacacctaatcttgaagagcgcccgagcttggccaagaaatatgc |
26173760 |
T |
|
| Q |
784 |
gcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatctt |
855 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
26173759 |
acaatggttgccctctcgaagcatatgttggaaagaaatgttaggaatatgctcatttaacccaaaaatctt |
26173688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 670 - 851
Target Start/End: Complemental strand, 44560311 - 44560132
Alignment:
| Q |
670 |
cagggttcagcatggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttg |
769 |
Q |
| |
|
||||||||||| |||||||||| | |||| || |||||||| | ||||||||||||||| ||||| ||||||| || |||||||||||| || | ||| |
|
|
| T |
44560311 |
cagggttcagcctggggcatcaagtgtcaacaccgacttcaatttcgatgggggagcatgtcaaaaagtcacacctagtcttgaagagcgcccaagattg |
44560212 |
T |
|
| Q |
770 |
accaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaa |
851 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| | | ||||||||||||| |
|
|
| T |
44560211 |
at--agaaatatgcgcaatggttgccctctcgaagcacatgtttgaaagaaatgttaggaatatgcgcttttaacccaaaaa |
44560132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 731 - 855
Target Start/End: Original strand, 12029721 - 12029845
Alignment:
| Q |
731 |
caaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaa |
830 |
Q |
| |
|
||||| ||||||| ||||||||||| || | || |||| |||||||||| ||||||||| | ||||||||||||||||| |||| |||||||| ||| |
|
|
| T |
12029721 |
caaaaagtcacaccaaatcttgaagaacgcctgagcttggttaagaaatatgcgcaatggttacactctcgaagcacatgttggaaataaatgttaggaa |
12029820 |
T |
|
| Q |
831 |
tatactcctttaacccaaaaatctt |
855 |
Q |
| |
|
||| || |||||||||||||||||| |
|
|
| T |
12029821 |
tatgcttctttaacccaaaaatctt |
12029845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 776 - 857
Target Start/End: Complemental strand, 27086655 - 27086575
Alignment:
| Q |
776 |
aaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| ||||||||| ||| |||||| || |||||| |||||||| |||| |
|
|
| T |
27086655 |
aaatatgcgcaatggttgccctctcgaagtacatgttggaaagaaatattatgaatatgct-ctttaatccaaaaatgttca |
27086575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 682 - 835
Target Start/End: Original strand, 35388583 - 35388735
Alignment:
| Q |
682 |
tggggcatcacgcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatat |
781 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| || | | || || ||||||||||||||||| |||||| | || |||| ||||||||| |||| | |
|
|
| T |
35388583 |
tggggcatcaagcctcaacactgacttcaactatgaatgagaagtctgtcaaaatgtcacacttaaccttgaaaa-cggccgagcttgaccaaaaaattt |
35388681 |
T |
|
| Q |
782 |
gtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatac |
835 |
Q |
| |
|
|||||| | ||||||| || |||||||| ||||||||||||| |||||||| |
|
|
| T |
35388682 |
gtgcaacaacttccctctctaaacacatgttggaaagaaatgttaggaatatac |
35388735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 754
Target Start/End: Complemental strand, 27086760 - 27086699
Alignment:
| Q |
693 |
gcctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaa |
754 |
Q |
| |
|
||||||| | ||||||||||| |||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
27086760 |
gcctcaacaatgacttcaacttcgatggggaagtatgccaaaatatcacacttaatcttgaa |
27086699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 857
Target Start/End: Complemental strand, 47482912 - 47482793
Alignment:
| Q |
738 |
tcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactc |
837 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||| |||| |||| || ||||| ||||| | || |||| |||| || |||| ||||||| |||||| ||| |
|
|
| T |
47482912 |
tcacacctaagcttaaagagcgtccgagcttggccaaaaaatttgcgcaatagttgctcacttgaagtacatattggaaaacaatgttaggaatatgctc |
47482813 |
T |
|
| Q |
838 |
ctttaacccaaaaatcttca |
857 |
Q |
| |
|
|||||| | || |||||||| |
|
|
| T |
47482812 |
ctttaatcaaagaatcttca |
47482793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 732 - 782
Target Start/End: Original strand, 27953267 - 27953317
Alignment:
| Q |
732 |
aaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatg |
782 |
Q |
| |
|
||||||||| || ||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
27953267 |
aaaatgtcaaacctaaccttgaagagcacccgaacttgaccaagaaatatg |
27953317 |
T |
|
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Target: scaffold0031 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 709 - 857
Target Start/End: Complemental strand, 106544 - 106396
Alignment:
| Q |
709 |
caactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttgccctctcgaagcaca |
808 |
Q |
| |
|
|||||| ||||| |||| ||||||||| ||||||| |||||| ||| |||| |||||||| ||||||| | || | ||||||||| ||||||||||||| |
|
|
| T |
106544 |
caactctgatggaggagtatgccaaaaagtcacacctaatctcgaatagcgctcgaacttggccaagaagtttgcgtaatggttgcactctcgaagcaca |
106445 |
T |
|
| Q |
809 |
tgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
106444 |
tgttggaaagaaatgttacgaatatgctcctttaacctaaaaatcttca |
106396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 694 - 857
Target Start/End: Complemental strand, 23762426 - 23762263
Alignment:
| Q |
694 |
cctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttg |
793 |
Q |
| |
|
|||||| ||| |||||||||| |||||| ||| |||||||| || |||| | ||||| || |||| || | |||| ||||||||||| ||||||||||| |
|
|
| T |
23762426 |
cctcaacactaacttcaactctgatgggagagtttgccaaaaggttacacctgatcttaaaaagcgcccaatcttggccaagaaatatatgcaatggttg |
23762327 |
T |
|
| Q |
794 |
ccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||| ||||||||| | ||| |||||||| |||||| ||||||||| | ||||||||||| |
|
|
| T |
23762326 |
ccctctctaagcacatgctcaaaaaaaatgttaagaatatgctcctttaaactaaaaatcttca |
23762263 |
T |
|
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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 794 - 857
Target Start/End: Original strand, 40038391 - 40038454
Alignment:
| Q |
794 |
ccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||| ||||||||| ||||| ||||||| |
|
|
| T |
40038391 |
ccctctctaagcacatgttggaaagaaatgttaagaatattctcctttaaaccaaagatcttca |
40038454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 794 - 854
Target Start/End: Original strand, 27490345 - 27490405
Alignment:
| Q |
794 |
ccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatct |
854 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| ||| ||||| ||||| |||| |
|
|
| T |
27490345 |
ccctctctaagcacatgttagaaagaaatgttaggaatatgctcttttaaaccaaagatct |
27490405 |
T |
|
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Target: scaffold0173 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: scaffold0173
Description:
Target: scaffold0173; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 695 - 836
Target Start/End: Complemental strand, 6830 - 6689
Alignment:
| Q |
695 |
ctcaagactgacttcaactccgatgggggagcatgccaaaatgtcacacttaatcttgaagagcgtccgaacttgaccaagaaatatgtgcaatggttgc |
794 |
Q |
| |
|
||||| |||||||||||||| |||| ||| | |||||||| ||||||| | ||||| |||||||||| | | ||||||||||||||| ||||||||||| |
|
|
| T |
6830 |
ctcaacactgacttcaactctgatgcggggtc-tgccaaaaagtcacacctgatcttaaagagcgtccaagcatgaccaagaaatatgcgcaatggttgc |
6732 |
T |
|
| Q |
795 |
cctctcgaagcaca-tgttagaaagaaatgttacgaatatact |
836 |
Q |
| |
|
|||||||||| | | |||| |||| |||||||| |||||||| |
|
|
| T |
6731 |
cctctcgaagtaaattgttggaaataaatgttagaaatatact |
6689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 784 - 857
Target Start/End: Original strand, 24110054 - 24110127
Alignment:
| Q |
784 |
gcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttca |
857 |
Q |
| |
|
||||||||||| || || ||||| ||||| ||||||||||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
24110054 |
gcaatggttgcactttcaaagcatatgttggaaagaaatgttagaaatatgttcctttaatccaaaaatcttca |
24110127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 851
Target Start/End: Complemental strand, 37813206 - 37813115
Alignment:
| Q |
759 |
gtccgaacttgaccaagaaatatgtgcaatggttgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaa |
851 |
Q |
| |
|
|||||| ||||| |||||||| |||||||| | ||| ||||| |||||||| || ||||||||||| | ||||| |||| ||||| ||||||| |
|
|
| T |
37813206 |
gtccgagcttgatcaagaaatttgtgcaatagctgctctctctaagcacat-ttggaaagaaatgtcaggaatacactcttttaaaccaaaaa |
37813115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 802 - 851
Target Start/End: Complemental strand, 244041 - 243992
Alignment:
| Q |
802 |
aagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaa |
851 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
244041 |
aagcacatgatggaaagaaatgttatgaatattctcctttaaaccaaaaa |
243992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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