View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0440-Insertion-3 (Length: 812)
Name: NF0440-Insertion-3
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0440-Insertion-3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 794; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 794; E-Value: 0
Query Start/End: Original strand, 7 - 812
Target Start/End: Original strand, 39726426 - 39727231
Alignment:
| Q |
7 |
aagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagtt |
106 |
Q |
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| T |
39726426 |
aagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagtt |
39726525 |
T |
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| Q |
107 |
aaccaaagtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccagccaatataacaagtgaaatagcagcaaaaacacactgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726526 |
aaccaaagtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccagccaatataacaagtgaaatagcagcaaaaacacactgaa |
39726625 |
T |
|
| Q |
207 |
accaaaccatagtagccattggataaaatggttcaatctcagcagtctccaaactaccgtcatgatgataatgcaccgtcgcgggtagccccgcctgtct |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39726626 |
accaaaccatagtagccattggataaaatggttcaatctcagcagtctccaaactaccgtcatgatgataatgcaccgtcgcgggtagccctgcctgtct |
39726725 |
T |
|
| Q |
307 |
gattagaaatttttggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatgtaacccaacagatt |
406 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39726726 |
gattagaaatttctggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcccatgtaacccaacagatt |
39726825 |
T |
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| Q |
407 |
ataaccgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgcttt |
506 |
Q |
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| T |
39726826 |
ataaccgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgcttt |
39726925 |
T |
|
| Q |
507 |
gaattccaacaagggtagctgatatcatttgccatgagttgtctcctttgtttaaccagtctggtactgctagacttgtccatgcttggtatgctaccgg |
606 |
Q |
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| T |
39726926 |
gaattccaacaagggtagctgatatcatttgccatgagttgtctcctttgtttaaccagtctggtactgctagacttgtccatgcttggtatgctaccgg |
39727025 |
T |
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| Q |
607 |
taatgtgtttaccggtggagcagccatgattaatgtttgcttagtttatatattgttactattacaattgcacactcaataaatactctatgaacttggt |
706 |
Q |
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| T |
39727026 |
taatgtgtttaccggtggagcagccatgattaatgtttgcttagtttatatattgttactattacaattgcacactcaataaatactctatgaacttggt |
39727125 |
T |
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| Q |
707 |
ttatatatacagagagctaagatacgtgtatacgtgactatgtgatgtaaaagagctaaaccaaagaaccgttgacctacaaaaattgtttaaggtatca |
806 |
Q |
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| T |
39727126 |
ttatatatacagagagctaagatacgtgtatacgtgaatatgtgatgtaaaagagctaaaccaaagaaccgttgacctacaaaaattgtttaaggtatca |
39727225 |
T |
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| Q |
807 |
ttttta |
812 |
Q |
| |
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|||||| |
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| T |
39727226 |
ttttta |
39727231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 311 - 571
Target Start/End: Original strand, 25671269 - 25671529
Alignment:
| Q |
311 |
agaaatttttggcctaaagcagggccagctttaccccaaaagggtaaaagtttttcaccaaatgacatcttataagcc-catgtaacccaacagattata |
409 |
Q |
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||||||||||| |||||||| || || |||||||||| || |||||||||| |||||||| | ||| ||||||| || | |||||||||||||| |
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| T |
25671269 |
agaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttcatcaccaaaagccattctataagcaacaag-aacccaacagattaat |
25671367 |
T |
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| Q |
410 |
accgccgcgaaagcgtagagagccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaa |
509 |
Q |
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| T |
25671368 |
actgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttctttttcactatgcttgcatagagaattactagtcctggcatgctttgta |
25671467 |
T |
|
| Q |
510 |
ttccaacaagggtagctgatatcatttgccatgagttgtctcctttgtttaaccagtctggt |
571 |
Q |
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||||| || || |||| | |||||||||||| ||||||||||||||||||||| |||||| |
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| T |
25671468 |
aaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaaccattctggt |
25671529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 25670962 - 25671126
Alignment:
| Q |
7 |
aagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaa-ccaccaccccacaaactaaaagcaccaatagtataagaaaaagt |
105 |
Q |
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|||||||||||||||||||||||||||||| || |||||||| ||| | |||||| ||||||||||| | |||||||||||||| ||||||||||||| | |
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| T |
25670962 |
aagatgaataacataaccaccagaataatcaatcacaccccaatgata-aagaaatccaccaccccaaagactaaaagcaccaacagtataagaaaaaat |
25671060 |
T |
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| Q |
106 |
taaccaaagtggcacaaacatcatccaagccttaaaattcatcctagccaaaacagaaccagccaa |
171 |
Q |
| |
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| T |
25671061 |
aagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaaccagccaa |
25671126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 431 - 560
Target Start/End: Original strand, 5625597 - 5625726
Alignment:
| Q |
431 |
gccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgata |
530 |
Q |
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||||||||||| || || | ||||||||||||||| || || || ||||||| || || || |||||||||||||| | ||||| ||||| | || | |
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| T |
5625597 |
gccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtagaccaactagggttgatgctg |
5625696 |
T |
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| Q |
531 |
tcatttgccatgagttgtctcctttgttta |
560 |
Q |
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| T |
5625697 |
tcatttgccatgagttgtctcctttgttta |
5625726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 5625173 - 5625302
Alignment:
| Q |
7 |
aagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccaccccacaaactaaaagcaccaatagtataagaaaaagtt |
106 |
Q |
| |
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||||||||||||||| |||||||| |||| || |||||||| ||| |||| || ||||||||||| | |||||||||||||| ||| ||||| ||| | |
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| T |
5625173 |
aagatgaataacatagccaccagagaaatcaatgacaccccaatgatacaaaaatccaccaccccatatactaaaagcaccaacagtgtaagagaaaatg |
5625272 |
T |
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| Q |
107 |
aaccaaagtggcacaaacatcatccaagcc |
136 |
Q |
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| T |
5625273 |
agccaaagaggtacaaaagccatccaagcc |
5625302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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