View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0440-Insertion-4 (Length: 730)

Name: NF0440-Insertion-4
Description: NF0440
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0440-Insertion-4
NF0440-Insertion-4
[»] chr5 (1 HSPs)
chr5 (8-730)||(43410489-43411235)


Alignment Details
Target: chr5 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 8 - 730
Target Start/End: Original strand, 43410489 - 43411235
Alignment:
Q  8 catctaatattaatatccaggactaccatcagcagctgcaggaggatcttgatactaagcaattactgctacatttcaacaacaacaataatcaaatcct 107  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  43410489 catctaatattaatatccaggactaccatcagc---tgcaggaggatcttgatactaagcaattactgctacatttcaac---aacaataatcaaatcct 43410582  T
Q  108 acctccaagaccaactgtggcctggaacaacaacaattcttcatcatcaacactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410583 acctccaagaccaactgtggcctggaacaacaacaattcttcatcatcaacactcctagaaaggggtgctttcagagtgaaggcaactttcgcggatgaa 43410682  T
Q  208 aaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410683 aaaatcaggtttagcttgcaagcaatgtggggatttagagatttgcagcttgagattgcaaggcgatttaacctaacagatatgaacaacttggttctaa 43410782  T
Q  308 aatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410783 aatatttggatgatgaaggagaatgggttgtgttatcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattag 43410882  T
Q  408 actctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctc----ctagctagcttacaacttc-- 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||      
T  43410883 actctctctttttcaagcttcccctctcaatcttccaaacactttccgcaacagcagcagcagcagtccatcctcctagctagctagcttacaacttctg 43410982  T
Q  502 -tcatctgaatgtgttg------------tgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctt 588  Q
     ||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43410983 atcatctgaatgtgttgtgtctgtctgtctgtctgtctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctt 43411082  T
Q  589 tactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcatattgtttaattagagttttagttaacaaagcat 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  43411083 tactgcttttcatttaattactcgttaagttagattctgcggctttattttgttaattacacatcttgttgtttaattagagttttagttaacaaagcat 43411182  T
Q  689 cataccaaa-----------catgtagtcttcgtgattacataaactattttg 730  Q
    |||||||||           ||||||||||| |||||||||||||||||||||    
T  43411183 cataccaaactgttacttctcatgtagtctttgtgattacataaactattttg 43411235  T

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